PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g358000.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 24995.7 Da    PI: 8.7533
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g358000.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.66.9e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+i+n++ rqvtfskRr g++KKA+ELS+LCdae+a+++fs tgkl+e+ s
  Pd.00g358000.m01  9 KKIDNTTARQVTFSKRRRGLFKKAHELSTLCDAEIALVVFSATGKLFEFTS 59
                      68***********************************************75 PP
2K-box547.3e-19881701698
             K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         +  +a L+kei +  +e+R+l+Ge+L++L++keLq+Le+ L ++l+++R+ K e++l++i  l+ k  ++ +enk+L++ +
  Pd.00g358000.m01  88 LESSTSAALRKEIAENTHELRKLMGEELQELNMKELQELEKLLGSGLRRVRDAKCEIVLKEITSLKWKGSQMIQENKRLKQVM 170
                       556678899****999***************************************************************9866 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MTRRKIQIKK IDNTTARQVT FSKRRRGLFK KAHELSTLCD AEIALVVFSA TGKLFEFTSS  60
SVQQVIERHD LLSSNFDRLN HPSLELQLES STSAALRKEI AENTHELRKL MGEELQELNM  120
KELQELEKLL GSGLRRVRDA KCEIVLKEIT SLKWKGSQMI QENKRLKQVM MANRQVQTLE  180
LEQGQSSEPI GDFIHSDLFQ DHDSSDTSLK LGLAFPSGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-73MIKC_MADS family protein