PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g359810.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 355aa MW: 39649.7 Da PI: 4.6463

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g359810.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.6	6e-31	8	109	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+l+++C+++C++apyf +e+ +f +h +FGa++++++l++lp +er a ++++eA+ara dP yG+v+ il+lq+q+ + +a Pd.00g359810.m01 8 PCGACKFLKKRCKRGCIFAPYFMHEEaITDFSSIHNVFGARKMSRILSTLPMSERAVASWTMTFEAHARAVDPTYGCVSYILDLQEQVLNIQA 100 7*******************999856************************************************************* PP DUF260 93 elallkeel 101 +l++++e+l Pd.00g359810.m01 101 QLDEAHEQL 109 **99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MSSRTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAITDFSS IHNVFGARKM SRILSTLPMS 60 ERAVASWTMT FEAHARAVDP TYGCVSYILD LQEQVLNIQA QLDEAHEQLA RAVAPVANPN 120 QDMENSNEQS EVAKATEFES LPQFSFTHTN NVDNENMNLN YHVSGSYKNT VNIPTENVAD 180 GWVNNEGTSS MSFFDMEWSF EDVDELLVDP WCPNMGKVQA LTASTPAADE VLEKCQLRDA 240 IREKEEGLDI LVVQDGTNWS MGQRQLFCMR RALLKRSRIL VLDEATASMD NATDYILQKT 300 IRTEFADCTV ITVAHRIPTV MDCTKVLAIS DGQIAYGASS GDIALKVIDA SNNLH

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MSSRTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAITDFSS IHNVFGARKM SRILSTLPMS  60
ERAVASWTMT FEAHARAVDP TYGCVSYILD LQEQVLNIQA QLDEAHEQLA RAVAPVANPN  120
QDMENSNEQS EVAKATEFES LPQFSFTHTN NVDNENMNLN YHVSGSYKNT VNIPTENVAD  180
GWVNNEGTSS MSFFDMEWSF EDVDELLVDP WCPNMGKVQA LTASTPAADE VLEKCQLRDA  240
IREKEEGLDI LVVQDGTNWS MGQRQLFCMR RALLKRSRIL VLDEATASMD NATDYILQKT  300
IRTEFADCTV ITVAHRIPTV MDCTKVLAIS DGQIAYGASS GDIALKVIDA SNNLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	5e-41	LBD family protein