PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g359850.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 229aa    MW: 25881.8 Da    PI: 4.4748
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g359850.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.53.2e-3191092101
            DUF260   2 CaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       C aCk+l+++C+++C++apyf +e+   +f  +h +FGa++++++l++lp +er  a  ++++eA+ara dP yG+v+ il+lq+q+ + +a+
  Pd.00g359850.m01   9 CGACKFLKKRCKRGCIFAPYFMHEEaITDFSSIHNVFGANKMSRILSKLPMSERAVASWTMTFEAHARAVDPTYGCVSYILDLQEQVLNIQAQ 101
                       *********************999856****************************************************************** PP

            DUF260  94 lallkeel 101
                       l++++e+l
  Pd.00g359850.m01 102 LDEAHEQL 109
                       ***99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MSSRTFNHCG ACKFLKKRCK RGCIFAPYFM HEEAITDFSS IHNVFGANKM SRILSKLPMS  60
ERAVASWTMT FEAHARAVDP TYGCVSYILD LQEQVLNIQA QLDEAHEQLA RAVAPVANPN  120
QDLENSNEQS EVANPTEQAA VAKPTEFESI PQFSFTHTNN VDNENMNLNY HVSGSYKNTV  180
NIPTENVLDG WVNNEGTSSM SFFDMEWSFE DVDELLVDPW FSTYISNIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.17e-42LBD family protein