PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g361600.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 221aa    MW: 23725.9 Da    PI: 4.4374
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g361600.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-056082123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C+k+Fs+   L  H++ H
  Pd.00g361600.m01 60 YSCTSCDKVFSTTQALGGHQNAH 82
                      99******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MFNPYRSSAQ SSSTAPNLPI TANTPITPST DSIPIRFPLS PVLGACLSFH TIQSGDSCKY  60
SCTSCDKVFS TTQALGGHQN AHRKERNALF AREQQRAAEE NDRDRDVVLS PDPAGFGFGS  120
SSGGGHGGAS GSGTKRPPEG DGDGADQKKK AKYYEEDDDL KVVMPSMNLS LATRCSCDDL  180
IDEIEGSDSD LEWEDGEYMY FYQGGGASTS KTEELDLSLK L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.12e-08C2H2 family protein