PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g362490.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LSD

Protein Properties

Length: 585aa MW: 65863.2 Da PI: 8.886

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g362490.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.3	2.2e-12	416	440	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+ + Pd.00g362490.m01 416 CSGCRSILLYPRGATNVCCALCNII 440 **********************975 PP
2	zf-LSD1	41.4	2.4e-13	455	479	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ +rGA+sVRC++C+tV Pd.00g362490.m01 455 CGGCRTLLMHTRGATSVRCSCCHTV 479 ************************9 PP
3	zf-LSD1	45.2	1.5e-14	493	517	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V Pd.00g362490.m01 493 CGNCRTTLMYPYGAPSVKCAVCHYV 517 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MKHPHQHFLA VRLKTTSSQY VASRARDPTF EKLMDKYKNL LKVIAVQDLI LANPTNPAVS 60 IDFLSRLSQK LHLNRGAVSF LRKYPHIFHI YHDPTKSQTF CRLTDAAIQI SKEEAEVINA 120 SLPLVVDRLV RLLSMSRSRM LPLRAILKVG RELGLPDDFE DSVISRNSHL FQLCDAHEPN 180 THNLKLFDVI PDKFTAAVEN WRVEEYCKEG CNVDRAEIQF SFKHGYPPGM RLRKNFRAKV 240 KEWQRLPYVG PYDEVSEKKR SSKAGMMAVE KRAVATVHEF LNLTVEKTVE VEKISHFRKW 300 FGFDLNIRDL FLDHPGIFYL STKGKRHTVF LREAYERGCL IHPNPVYHAR RKLLDLVVLG 360 RHGLLTDELR SIASNKEAES LEQICEDMRI SSLVGLWEDF REPEFHEESM QSQLVCSGCR 420 SILLYPRGAT NVCCALCNII TPVPPPGTEM AQLICGGCRT LLMHTRGATS VRCSCCHTVN 480 LAPASSQVAH VNCGNCRTTL MYPYGAPSVK CAVCHYVTNV GMTNMRVPIP VHRPNGTANS 540 GMAPSTSTAM PHSQSQTVVV ENPMSVDESG KLVSNVVVGV TTGKK

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MKHPHQHFLA VRLKTTSSQY VASRARDPTF EKLMDKYKNL LKVIAVQDLI LANPTNPAVS  60
IDFLSRLSQK LHLNRGAVSF LRKYPHIFHI YHDPTKSQTF CRLTDAAIQI SKEEAEVINA  120
SLPLVVDRLV RLLSMSRSRM LPLRAILKVG RELGLPDDFE DSVISRNSHL FQLCDAHEPN  180
THNLKLFDVI PDKFTAAVEN WRVEEYCKEG CNVDRAEIQF SFKHGYPPGM RLRKNFRAKV  240
KEWQRLPYVG PYDEVSEKKR SSKAGMMAVE KRAVATVHEF LNLTVEKTVE VEKISHFRKW  300
FGFDLNIRDL FLDHPGIFYL STKGKRHTVF LREAYERGCL IHPNPVYHAR RKLLDLVVLG  360
RHGLLTDELR SIASNKEAES LEQICEDMRI SSLVGLWEDF REPEFHEESM QSQLVCSGCR  420
SILLYPRGAT NVCCALCNII TPVPPPGTEM AQLICGGCRT LLMHTRGATS VRCSCCHTVN  480
LAPASSQVAH VNCGNCRTTL MYPYGAPSVK CAVCHYVTNV GMTNMRVPIP VHRPNGTANS  540
GMAPSTSTAM PHSQSQTVVV ENPMSVDESG KLVSNVVVGV TTGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	2e-72	LSD family protein