PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g378400.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 1552aa MW: 173043 Da PI: 6.627

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g378400.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00089	1523	1549	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg sF+ s++ rH r+ H Pd.00g378400.m01 1523 YQCKveGCGLSFRFVSDFSRHRRKtgH 1549 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1552 aa Download sequence
MGDVEIPNWL KGLPLAPEFR PTHTEFADPI AYISKIEKEA SEFGICKIIP PLPKPSKRYV 60 FSNLNKSLAK CPELGSDVNL LNDCSPLKTG SGDGRNDAEA RAVFTTRHQE LGQSVKRVKG 120 AAVQNPPSGV HKQVWQSGEI YTLEQFESKS RAFARSILGT IKEVSPLLIE DMFWKAASEK 180 PIYVEYANDV PGSAFEEPVG QFRYTNRRRR KRNSYHRSRE NSDSKTSDLI SSSERDSHSI 240 QVKNASPKNV SDTCLEVSKS CTSPEILSAE ETSQSSRRKN PNACCDTEGT AGWRLSNSPW 300 NLQVIARSPG SLTRFMPDDI PGVTSPMVYI GMLFSWFAWH VEDHELHSMN FLHTGSSKTW 360 YAVPGDYAFD FEELIRTEAF GGNVDRLAAL SLLGNKTTLI SPEVVVASGI PCCRLIQNPG 420 EFVVTFPRAY HVGFSHGFNC GEAANFGTPH WLEVAKEAAV RRAAMNYLPM LSHQQLLYLL 480 TMSFVSRVPR SLLPGVRGSR MRDRQKEERE LSVKKAFVED MLKENNVLSV LLRKESSYHA 540 VLWNPDLLPY TSKEPLTPST GAPVDKKPKE NATHIQCGNN NNDQNLLFDE MSLYMENMND 600 LYLGSDDLSC DFQVDSGTLA CVACGILGFP FMSVVQPSEK ASMKLQPEYF LAQEFPGVSG 660 LEKSHLSTGH QAFVKGCVTE DPSPVPNVMS PAKDPLIPST TKLNKDWNTV NKFLRPRSFC 720 LEHAVEIVEL LQSKGGANVL VICHSDYQKI KAPSAAIAEE IGCSFNYTEV PLDIASKEDL 780 NLIDLAVDDE HDECREDWTS KLGINLRYCV KVRKNSSSKQ VQHALTLGGL FSKQSPSSDF 840 QRVKWQSKRS RSKKFNHPAH CRPCGSIEKK DEVVERKSDD TSFKRDEKII QYSRRNYKLK 900 AGDSTGAGRI CGYPATCGEG DKHSRMASES NIRDIGNSTS SCARFYSSKS NRMSETYPVV 960 QMLEATKDIS LYSTHSQVAA KLATTTLIAE GVEAQVENHS SEGRNMYGEG CGLVSRDSSD 1020 MQDEIVIPEE ASENKSEAQM VNTVMEISCM NSEVCDSMTL GDEVQPENQT TNKRNKAPVS 1080 CSSHLLQDPT FAAAEDYDGC PRETHIADEF SKDVSLEFKL EEEIKSLKGR NEEPSLSPTR 1140 QINEPSPASI EGTSGVPRDL CAAEDSFPGP ISCSEEFRTA DRSEGEHVST SVTQMEITQP 1200 CISMEESSQV PRGCSSEEGP ENGVTSDRVQ QEVLTTNGPI KEPILGLVIE TENQPTPGSV 1260 EEFEVLRVTC ATDNINGFVA LDNKEQRKNR TTNSGEELIY SQDIARCQPL PASIQTYSRI 1320 KREPRAAQGL RNSSEVCLSP LDKELESIGS SIADPAPIPE MGRKRKREVE QIKDDNFNFN 1380 GFIRGPCEGL RPRAGKDAMS RSGIDNLHKE VEEKPVTKKV KKPSDPPNPK YKKEQERKSH 1440 RCDLEGCRMS FGTKAELVLH KRNRCPHEGC GKRFSSHNYA MIHSRVHDDD RPLKCPWKGC 1500 SMSFKWAWAR TEHIRVHTGE RPYQCKVEGC GLSFRFVSDF SRHRRKTGHY VS

Sequence ? help Back to Top

Protein Sequence Length: 1552 aa Download sequence

MGDVEIPNWL KGLPLAPEFR PTHTEFADPI AYISKIEKEA SEFGICKIIP PLPKPSKRYV  60
FSNLNKSLAK CPELGSDVNL LNDCSPLKTG SGDGRNDAEA RAVFTTRHQE LGQSVKRVKG  120
AAVQNPPSGV HKQVWQSGEI YTLEQFESKS RAFARSILGT IKEVSPLLIE DMFWKAASEK  180
PIYVEYANDV PGSAFEEPVG QFRYTNRRRR KRNSYHRSRE NSDSKTSDLI SSSERDSHSI  240
QVKNASPKNV SDTCLEVSKS CTSPEILSAE ETSQSSRRKN PNACCDTEGT AGWRLSNSPW  300
NLQVIARSPG SLTRFMPDDI PGVTSPMVYI GMLFSWFAWH VEDHELHSMN FLHTGSSKTW  360
YAVPGDYAFD FEELIRTEAF GGNVDRLAAL SLLGNKTTLI SPEVVVASGI PCCRLIQNPG  420
EFVVTFPRAY HVGFSHGFNC GEAANFGTPH WLEVAKEAAV RRAAMNYLPM LSHQQLLYLL  480
TMSFVSRVPR SLLPGVRGSR MRDRQKEERE LSVKKAFVED MLKENNVLSV LLRKESSYHA  540
VLWNPDLLPY TSKEPLTPST GAPVDKKPKE NATHIQCGNN NNDQNLLFDE MSLYMENMND  600
LYLGSDDLSC DFQVDSGTLA CVACGILGFP FMSVVQPSEK ASMKLQPEYF LAQEFPGVSG  660
LEKSHLSTGH QAFVKGCVTE DPSPVPNVMS PAKDPLIPST TKLNKDWNTV NKFLRPRSFC  720
LEHAVEIVEL LQSKGGANVL VICHSDYQKI KAPSAAIAEE IGCSFNYTEV PLDIASKEDL  780
NLIDLAVDDE HDECREDWTS KLGINLRYCV KVRKNSSSKQ VQHALTLGGL FSKQSPSSDF  840
QRVKWQSKRS RSKKFNHPAH CRPCGSIEKK DEVVERKSDD TSFKRDEKII QYSRRNYKLK  900
AGDSTGAGRI CGYPATCGEG DKHSRMASES NIRDIGNSTS SCARFYSSKS NRMSETYPVV  960
QMLEATKDIS LYSTHSQVAA KLATTTLIAE GVEAQVENHS SEGRNMYGEG CGLVSRDSSD  1020
MQDEIVIPEE ASENKSEAQM VNTVMEISCM NSEVCDSMTL GDEVQPENQT TNKRNKAPVS  1080
CSSHLLQDPT FAAAEDYDGC PRETHIADEF SKDVSLEFKL EEEIKSLKGR NEEPSLSPTR  1140
QINEPSPASI EGTSGVPRDL CAAEDSFPGP ISCSEEFRTA DRSEGEHVST SVTQMEITQP  1200
CISMEESSQV PRGCSSEEGP ENGVTSDRVQ QEVLTTNGPI KEPILGLVIE TENQPTPGSV  1260
EEFEVLRVTC ATDNINGFVA LDNKEQRKNR TTNSGEELIY SQDIARCQPL PASIQTYSRI  1320
KREPRAAQGL RNSSEVCLSP LDKELESIGS SIADPAPIPE MGRKRKREVE QIKDDNFNFN  1380
GFIRGPCEGL RPRAGKDAMS RSGIDNLHKE VEEKPVTKKV KKPSDPPNPK YKKEQERKSH  1440
RCDLEGCRMS FGTKAELVLH KRNRCPHEGC GKRFSSHNYA MIHSRVHDDD RPLKCPWKGC  1500
SMSFKWAWAR TEHIRVHTGE RPYQCKVEGC GLSFRFVSDF SRHRRKTGHY VS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1421	1438	KKPSDPPNPKYKKEQERK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein