PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g378530.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 641aa MW: 71095.3 Da PI: 7.2265

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g378530.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.2	7.7e-24	112	213	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + Pd.00g378530.m01 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFF--R 200 89**************************986445444..8999*****************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ l+v+++r+ Pd.00g378530.m01 201 AESGDLCVGIRRA 213 489999**997 PP
2	Auxin_resp	113.6	1.8e-37	251	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF+vk+ +v++a++++++ GmRfkm fetedss++++ +Gt++ v+ +dp+rWp+S+Wr+L+ Pd.00g378530.m01 251 AATLAASGQPFEVVYYPRASTPEFCVKATSVRAAMQIQWCSGMRFKMPFETEDSSRISWfMGTISYVQVADPSRWPESPWRLLQ 334 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence
MNNNSEKWLL DSKFWHACAG GMVQMPHINS KVFYFPQGHA ECAHGIVDFG NSRIPPLILS 60 RISAIRYMAD HETDEVYAKM KLIPIRENAF DLEDGFVENN GTVENPEKPT SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TILAKDVHGE TWKFRHIYRG TPRRHLLTTG 180 WSNFVNQKKL VAGDSIVFFR AESGDLCVGI RRAKRGIGGG PEYSSGWNPA AARNSSGEWR 240 GKIRAEYVIE AATLAASGQP FEVVYYPRAS TPEFCVKATS VRAAMQIQWC SGMRFKMPFE 300 TEDSSRISWF MGTISYVQVA DPSRWPESPW RLLQVSWDEP DLLQNVKRVS PWLVELVSSI 360 PAIHLSPFST PRKKLRLQHN PDYSLVSQLP MPSVCSNFLN SSNPLCSVSD KISAGIQGAR 420 QAQFGLSSSD VFFNKLHSGM FPVGFQKLGH FAPSGIPEGN FMHMAESNEN ITCCLTKGIP 480 SQSLKGNSEI KTPHIFLFGQ LILTEQQMSK SSSGDCSSSD GHLEKKGNCS DGSGSVLHRN 540 GSVENSSDEG SPWNKDHQKS NVSVETSYCK VFIESGDVGT LDLSVLGSYK ELYGKLADMF 600 GLENSEMLRN VLYGDAKGAI KQTEDEPFSE FLKTARRLYM G

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence

MNNNSEKWLL DSKFWHACAG GMVQMPHINS KVFYFPQGHA ECAHGIVDFG NSRIPPLILS  60
RISAIRYMAD HETDEVYAKM KLIPIRENAF DLEDGFVENN GTVENPEKPT SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TILAKDVHGE TWKFRHIYRG TPRRHLLTTG  180
WSNFVNQKKL VAGDSIVFFR AESGDLCVGI RRAKRGIGGG PEYSSGWNPA AARNSSGEWR  240
GKIRAEYVIE AATLAASGQP FEVVYYPRAS TPEFCVKATS VRAAMQIQWC SGMRFKMPFE  300
TEDSSRISWF MGTISYVQVA DPSRWPESPW RLLQVSWDEP DLLQNVKRVS PWLVELVSSI  360
PAIHLSPFST PRKKLRLQHN PDYSLVSQLP MPSVCSNFLN SSNPLCSVSD KISAGIQGAR  420
QAQFGLSSSD VFFNKLHSGM FPVGFQKLGH FAPSGIPEGN FMHMAESNEN ITCCLTKGIP  480
SQSLKGNSEI KTPHIFLFGQ LILTEQQMSK SSSGDCSSSD GHLEKKGNCS DGSGSVLHRN  540
GSVENSSDEG SPWNKDHQKS NVSVETSYCK VFIESGDVGT LDLSVLGSYK ELYGKLADMF  600
GLENSEMLRN VLYGDAKGAI KQTEDEPFSE FLKTARRLYM G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein