PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g379180.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 501aa MW: 54421.6 Da PI: 7.7083

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g379180.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30	8.7e-10	133	157	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G+ CkF H+ Pd.00g379180.m01 133 GEKDCAHYMLTRTCKFGELCKFDHP 157 7889********************8 PP
2	zf-CCCH	28.3	3e-09	184	210	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f +t Ck+G rCkF+H++ Pd.00g379180.m01 184 PGEPDCPYFIKTQRCKFGMRCKFNHPK 210 5789*********************96 PP
3	zf-CCCH	37.6	3.6e-12	233	257	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ Pd.00g379180.m01 233 EPPCAFYLKTGQCKFGATCKFHHPK 257 79*********************96 PP
4	zf-CCCH	38.4	2e-12	307	332	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ Pd.00g379180.m01 307 PGEPDCPFYLKTGSCKYGATCRYNHP 332 5789*********************9 PP
5	zf-CCCH	36.9	6.2e-12	394	416	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+++++tG+C++G++Ck++H+ Pd.00g379180.m01 394 IECDYYMKTGECRFGEQCKYHHP 416 68********************8 PP
6	zf-CCCH	40.2	5.5e-13	447	472	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C ++++tGtCkyG++CkF H+p Pd.00g379180.m01 447 GVAICVYYLKTGTCKYGATCKFDHPP 472 5789********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MSSHLYGYGA AQSAAAAAAA TAGLSSVYTS RALTDPTLRY LSGSDPFASA TDHHSRSSSM 60 YLATSHLMSQ SSWPAPDVEP GVPGVKRPSE ALYHQSFMGA YNTIGQEAWY SALAKRPRYE 120 SASNLPIYPQ RPGEKDCAHY MLTRTCKFGE LCKFDHPIWV PEGGIPDWKE VPLVAPSESL 180 PERPGEPDCP YFIKTQRCKF GMRCKFNHPK EKLAAAVASE NADVFALPER PSEPPCAFYL 240 KTGQCKFGAT CKFHHPKDIQ IPSAEQENKI GETGTIIQAE GTGFAVKLPV SFSPALLYNS 300 KELPVRPGEP DCPFYLKTGS CKYGATCRYN HPDRYDFCAA INPPIGAISH SIVAPPAAGL 360 NIGVINPAAS IYQTLAQPTV GGGQTVYPQR FGQIECDYYM KTGECRFGEQ CKYHHPIDRS 420 AVALSTTKPV QQQNVKLTLA GLPRREGVAI CVYYLKTGTC KYGATCKFDH PPPGEVMGMA 480 ASQGASGGEA KADEFTQEQQ Q

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MSSHLYGYGA AQSAAAAAAA TAGLSSVYTS RALTDPTLRY LSGSDPFASA TDHHSRSSSM  60
YLATSHLMSQ SSWPAPDVEP GVPGVKRPSE ALYHQSFMGA YNTIGQEAWY SALAKRPRYE  120
SASNLPIYPQ RPGEKDCAHY MLTRTCKFGE LCKFDHPIWV PEGGIPDWKE VPLVAPSESL  180
PERPGEPDCP YFIKTQRCKF GMRCKFNHPK EKLAAAVASE NADVFALPER PSEPPCAFYL  240
KTGQCKFGAT CKFHHPKDIQ IPSAEQENKI GETGTIIQAE GTGFAVKLPV SFSPALLYNS  300
KELPVRPGEP DCPFYLKTGS CKYGATCRYN HPDRYDFCAA INPPIGAISH SIVAPPAAGL  360
NIGVINPAAS IYQTLAQPTV GGGQTVYPQR FGQIECDYYM KTGECRFGEQ CKYHHPIDRS  420
AVALSTTKPV QQQNVKLTLA GLPRREGVAI CVYYLKTGTC KYGATCKFDH PPPGEVMGMA  480
ASQGASGGEA KADEFTQEQQ Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein