PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g384190.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 215aa MW: 24713.2 Da PI: 10.3772

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g384190.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	65	119	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q + Lee F ++++++ ++++ LA++l+L++rqV vWFqNrRa+ k Pd.00g384190.m01 65 RKKLRLTKDQSTLLEESFSRHSTLNPARKQSLAEQLNLKQRQVEVWFQNRRARTK 119 678899***********************************************98 PP
2	HD-ZIP_I/II	111.9	4.3e-36	65	153	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q++lLEesF+++++L+p rK++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+ k+++ +l +en+rL+ke +eL+ + Pd.00g384190.m01 65 RKKLRLTKDQSTLLEESFSRHSTLNPARKQSLAEQLNLKQRQVEVWFQNRRARTKLKQTEVDCEFWKKRCGSLGDENRRLKKELQELK-S 153 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MRKKENPLVC LDLSFALCPK QQVASLGDRM ENRSSLRAMD EDEENERSIG TNNKSIIMNN 60 KNGVRKKLRL TKDQSTLLEE SFSRHSTLNP ARKQSLAEQL NLKQRQVEVW FQNRRARTKL 120 KQTEVDCEFW KKRCGSLGDE NRRLKKELQE LKSLNKNGAS PLYIQIPKAT MLSMCPSCER 180 MVKAHHHDQA AAKNTEDLNV VRKSNKLQGG FDGTN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-53	HD-ZIP family protein