PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g384430.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 1073aa MW: 118033 Da PI: 6.2805

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g384430.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.8	3.7e-22	136	237	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F + Pd.00g384430.m01 136 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfaMQPPAQ--ELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--R 224 99***************************95444444..8********************************************..5 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++++l+++++r+ Pd.00g384430.m01 225 DEKQQLLLGIRRA 237 688889**997 PP
2	Auxin_resp	116.4	2.4e-38	262	345	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka +++s+GmRf+m+fete+s +rr++Gt++g+sdld+vrW+nS+Wr+L+ Pd.00g384430.m01 262 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAACgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKNSQWRNLQ 345 79**************************9887766*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1073 aa Download sequence
MKPPANGAGA AAANGPSNSC EGGENVKIIN PELWQACAGP LVNLPPAGTH VVYFPQGHSE 60 QVAASMKKDV DGQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMALQP VSSFDKDALL 120 RSDLALKSNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFAMQ PPAQELVARD 180 LHDTVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQQL LLGIRRANRQ 240 PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAACGNQ 300 LSLGMRFRMM FETEESGTRR YMGTITGISD LDSVRWKNSQ WRNLQVGWDE STAGERRNRV 360 SMWEIEPVTA PFFICPPPFF RSKRPRQPGM PDEESSDLDN LLKRTMPWFG DDMCMKDPQV 420 LPGLSLVQWM NMQQNSSAGN SIQPNYMHSF PGSALQNLAG ADLSRQLGMS GPQIPQLSNL 480 QFNAQRLPQQ AQQLDQLQKL PSTMNPLASM IQRQQQLGDI TQQPRQNSFN QSLPSSQVQS 540 QLLQPQTLQF QSQLPDQINQ QLQHLSDNQL QLQLLQKLQQ QQQSLLTQQA LQQPAQLIQL 600 QDQQRQLLDV SQSFSRPLTP TQMQEMPQMA PTSHPQSRTM PQQLTKNNNS QTNVRFSQPP 660 QQPKLQQQQP IMVPEMSGHM GLLPTPATNQ LSTAVSNVMT GGAGAGQSGI TDEVPSCSNS 720 PSTNNCPSLI QPLMNNRAHR NSLVGEDMAQ SATTILSPSA IETMPSNGNL LKDFQLKSDV 780 KPSVNIASNQ SQGILTAQTY LNSAAVQTDY LDTSSSTTSV GLSQNDVNLQ QNNAPLSFNP 840 QSMLFREASQ EGEVQADHRN NVSYGSNIDG QLGIPLNPDP MLAKGTVGLG KDFSNNLSSG 900 GMIGNYENAK DAQQELSSSM VSQSFGVPDM AFNSIDSTIN DSGFLDSGPW PPPPQFQRMR 960 TYTKVYKRGA VGRSIDIARY SGYGELKQDL ARRFGIEGQL EDRGRVGWKL VYVDHESDVL 1020 LVGDDPWEEF VNCVRCIKIL SPQEVQQMSL DGDFGGNAVL PNQACSSSDG GNA

Sequence ? help Back to Top

Protein Sequence Length: 1073 aa Download sequence

MKPPANGAGA AAANGPSNSC EGGENVKIIN PELWQACAGP LVNLPPAGTH VVYFPQGHSE  60
QVAASMKKDV DGQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMALQP VSSFDKDALL  120
RSDLALKSNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFAMQ PPAQELVARD  180
LHDTVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQQL LLGIRRANRQ  240
PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAACGNQ  300
LSLGMRFRMM FETEESGTRR YMGTITGISD LDSVRWKNSQ WRNLQVGWDE STAGERRNRV  360
SMWEIEPVTA PFFICPPPFF RSKRPRQPGM PDEESSDLDN LLKRTMPWFG DDMCMKDPQV  420
LPGLSLVQWM NMQQNSSAGN SIQPNYMHSF PGSALQNLAG ADLSRQLGMS GPQIPQLSNL  480
QFNAQRLPQQ AQQLDQLQKL PSTMNPLASM IQRQQQLGDI TQQPRQNSFN QSLPSSQVQS  540
QLLQPQTLQF QSQLPDQINQ QLQHLSDNQL QLQLLQKLQQ QQQSLLTQQA LQQPAQLIQL  600
QDQQRQLLDV SQSFSRPLTP TQMQEMPQMA PTSHPQSRTM PQQLTKNNNS QTNVRFSQPP  660
QQPKLQQQQP IMVPEMSGHM GLLPTPATNQ LSTAVSNVMT GGAGAGQSGI TDEVPSCSNS  720
PSTNNCPSLI QPLMNNRAHR NSLVGEDMAQ SATTILSPSA IETMPSNGNL LKDFQLKSDV  780
KPSVNIASNQ SQGILTAQTY LNSAAVQTDY LDTSSSTTSV GLSQNDVNLQ QNNAPLSFNP  840
QSMLFREASQ EGEVQADHRN NVSYGSNIDG QLGIPLNPDP MLAKGTVGLG KDFSNNLSSG  900
GMIGNYENAK DAQQELSSSM VSQSFGVPDM AFNSIDSTIN DSGFLDSGPW PPPPQFQRMR  960
TYTKVYKRGA VGRSIDIARY SGYGELKQDL ARRFGIEGQL EDRGRVGWKL VYVDHESDVL  1020
LVGDDPWEEF VNCVRCIKIL SPQEVQQMSL DGDFGGNAVL PNQACSSSDG GNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein