PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g385620.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 202aa    MW: 21837.3 Da    PI: 4.5906
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g385620.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.73e-18959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      ++ienk  r vtfs+Rrng++KKA+  S L +  va++++s+ g+ y+y+s
  Pd.00g385620.m01  9 EKIENKQSRLVTFSRRRNGLFKKAKDFSNLSGSSVAILVISPAGRRYTYAS 59
                      57***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MGKKKISIEK IENKQSRLVT FSRRRNGLFK KAKDFSNLSG SSVAILVISP AGRRYTYASP  60
SFDSVVDQFL SETIDGSSTV TDGSSSFDYV DDQFLPTTNA GSTSVDSMVD QFLSTTAASP  120
SYDSVIDEFL STAIGSPSVN STADQIVPIA TVGSSTATTS GSFRDTLKAL SDINIEACND  180
LEELMTLKNN LEQIIRERTR LI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-14M-type_MADS family protein