PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g388830.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 585aa MW: 64887.4 Da PI: 6.468

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g388830.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.7	1.1e-06	332	353	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H Pd.00g388830.m01 332 FCAICGKGFKRDANLRMHMRGH 353 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MPSPIRLQIS SSSSQIFLTH GRVHVHESCT VTKLINLTAA EKNPPTLSIW CAFNWKMDHK 60 EKLCADAWEN PSSGNDLTSK ISSDCPPFAN FKPQLHQQKW EDPSILDYGG IRIEPSFQEF 120 NQPSETQTSL PCNSNNDTKM ADREDGRMLE TPQANKSQDW DPRTMLNNLS FLEQKIHQLQ 180 DLVHLIVGRR GQVLGRPDEL VAQQQQLITA DLTSIIAQLI STAGSLLPSV KHTLSTTTPS 240 IGQFGQLGGS FVPSGVGTDA PVKLQNSNGS KLADQSNQTD LISNYGTEQN YSVEEHESKD 300 EEDADEGENL PPGSYEILQL EKEEILAPHT HFCAICGKGF KRDANLRMHM RGHGDEYKTA 360 AALAKPNKES SSEPTLIKRY SCPYAGCKRN KDHKKFQPLK TILCVKNHYK RTHCDKSYTC 420 SRCNTKKFSV IADLKTHEKH CGKDKWLCSC GTTFSRKDKL FGHIALFQGH TPAIPIDETK 480 GTLGPTDHGE GSEASNRVGN INFSFGSTAP GGGDVVQNLM DVKESINDPT SYFSPLNFET 540 CNFDGFHEFP RPPFEDSESS FSFLMPGSCN YTHKSGGEPN SNNLE

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MPSPIRLQIS SSSSQIFLTH GRVHVHESCT VTKLINLTAA EKNPPTLSIW CAFNWKMDHK  60
EKLCADAWEN PSSGNDLTSK ISSDCPPFAN FKPQLHQQKW EDPSILDYGG IRIEPSFQEF  120
NQPSETQTSL PCNSNNDTKM ADREDGRMLE TPQANKSQDW DPRTMLNNLS FLEQKIHQLQ  180
DLVHLIVGRR GQVLGRPDEL VAQQQQLITA DLTSIIAQLI STAGSLLPSV KHTLSTTTPS  240
IGQFGQLGGS FVPSGVGTDA PVKLQNSNGS KLADQSNQTD LISNYGTEQN YSVEEHESKD  300
EEDADEGENL PPGSYEILQL EKEEILAPHT HFCAICGKGF KRDANLRMHM RGHGDEYKTA  360
AALAKPNKES SSEPTLIKRY SCPYAGCKRN KDHKKFQPLK TILCVKNHYK RTHCDKSYTC  420
SRCNTKKFSV IADLKTHEKH CGKDKWLCSC GTTFSRKDKL FGHIALFQGH TPAIPIDETK  480
GTLGPTDHGE GSEASNRVGN INFSFGSTAP GGGDVVQNLM DVKESINDPT SYFSPLNFET  540
CNFDGFHEFP RPPFEDSESS FSFLMPGSCN YTHKSGGEPN SNNLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein