PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g396290.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 269aa    MW: 29083.2 Da    PI: 9.281
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g396290.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000217496123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C + F ++  L  H++ H
  Pd.00g396290.m01 74 FSCNYCQRKFYSSQALGGHQNAH 96
                      89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MQPAQDYHQE HPPQAPNTDI LLDLSLSNKE PDHGSNPELN LINCFDSTAS GNSSPETSSP  60
KGTTAHDAAE PRVFSCNYCQ RKFYSSQALG GHQNAHKRER TLAKKGHKSN CTAASSDALV  120
RLPSLLSHRF SSMASLPLHG SFNRSLGVQV HSTIHKPCYQ LSNTFGSTNT SLYGGHNSNS  180
NGCLRKSLDQ QPAIRRLVVP QNNVFHVQGG VGSSSSSSSG GVGRFVNSTS VRKFSPVTEG  240
IGGLWWNSSV GHFKTKQDEL QNLDLSLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.14e-39C2H2 family protein