PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g400510.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 253aa    MW: 28640.2 Da    PI: 8.487
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g400510.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-077296126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      +kt+lC++f   G C+yG  C+FaHg
  Pd.00g400510.m01 72 FKTRLCNNFKM-GNCHYGQGCCFAHG 96
                      79*********.*************8 PP
2zf-CCCH18.92.7e-06130150525
                       --SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                        Cr f+ +G C yGd+C++ H
  Pd.00g400510.m01 130 VCRLFFNGGKCTYGDKCRYPH 150
                       6*****************977 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MSDSGPTCQF FAPYLESGDN RHQLKPEFPN ADKDFKDHSD IESHPSKKPK TSEVVLISTI  60
PMAQNKMLPR NFKTRLCNNF KMGNCHYGQG CCFAHGISDL RKTWLNWQGL ETEEGFKART  120
CDHRRTSNDV CRLFFNGGKC TYGDKCRYPH HVTPENIREK SAISISTSGA HIGGSGQFYS  180
KRSLVESRSV QNSRTSSTSM SKLRMGVGAT YHKQVPGMEC NFKWSELEKM SRIYADWIED  240
IPFVHGSSSE AEC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.13e-12C3H family protein