PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g403900.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 671aa    MW: 75890.7 Da    PI: 5.9407
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g403900.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS398.85.8e-1222976681374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL++cA+av+++d +  ++lL+++++++sp gd+mqRla+yf+ +L+ar+a+ ++ +++ l ++++s    +++l+a++l+ +++P+ k+
  Pd.00g403900.m01 297 LRTLLTHCAQAVAANDERTGNELLKQIRQHSSPMGDAMQRLAHYFADGLEARMAGYGTPICRDLITKPAS---AADVLKAYNLYLDACPFKKL 386
                       6789************************************************************999999...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       s l  N++I++ +e+++r+HiiDf+i +G+QWp+L++ L+sRp+gpp+lRiTg++ p++g   +e++eetg+rLa++Ae+ +vpfefn+ +a+
  Pd.00g403900.m01 387 SILFSNKTIMNVAEKATRLHIIDFGIHYGFQWPSLIRNLSSRPGGPPKLRITGIDLPQPGfrPAEMVEETGRRLANYAETNKVPFEFNA-IAQ 478
                       ***********************************************************9*9***************************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       +++++++e+L+++++E+l+Vn+v++l rllde+v +es+rd+vLkl+++++P+v++++  + +++++ Fl+rf eal ++s++fd+le+++p+
  Pd.00g403900.m01 479 TWDTIQIEDLKIDRDEVLVVNSVHRLRRLLDETVMVESPRDKVLKLIRKINPDVFTLAIVNGSYSAPFFLTRFREALFHFSTMFDMLETNAPH 571
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       ++ er+ +Ere++gr+++nv+aceg+er+er et+++W+ r  +aGF+++pl+++++k ak  l+ ++ + + ++e+s++l+lgWk+r  +++
  Pd.00g403900.m01 572 DAPERMLIEREIFGRQAMNVIACEGSERIERPETYKQWQVRNLRAGFTQLPLNQEIVKIAKDRLQSCYHKDFVIDEDSQWLLLGWKGRIGYAL 664
                       ********************************************************************889********************** PP

              GRAS 371 SaWr 374
                       S+Wr
  Pd.00g403900.m01 665 SSWR 668
                       ***8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    
MYPDEDSPEE SDFSDVVLEY ISQMLMEEDM EEKTAMYQES AALHAAEQSY YELLQENFSS  60
PPCDLIHYAD HNHESHPLHC SYNSTICGSA RSIRDCDLPE YKSLHVASQS TSLPFHAPSN  120
ETGNVVDGFA DSLVSILRDP EFSNESELVM QFKRGFEEAS RFLPNANSLN VDFESNTLSL  180
KEGKAEAIGM VVKVDKKNEN SSDGSRGKKN PYHEDVSLER GKSNKLSAVY TESTVSSEMF  240
DRHLLNCGQG EXXXXALRET LQNRTIKIVQ QNGQSKGSSG GKDRGKRQGG KKDVVDLRTL  300
LTHCAQAVAA NDERTGNELL KQIRQHSSPM GDAMQRLAHY FADGLEARMA GYGTPICRDL  360
ITKPASAADV LKAYNLYLDA CPFKKLSILF SNKTIMNVAE KATRLHIIDF GIHYGFQWPS  420
LIRNLSSRPG GPPKLRITGI DLPQPGFRPA EMVEETGRRL ANYAETNKVP FEFNAIAQTW  480
DTIQIEDLKI DRDEVLVVNS VHRLRRLLDE TVMVESPRDK VLKLIRKINP DVFTLAIVNG  540
SYSAPFFLTR FREALFHFST MFDMLETNAP HDAPERMLIE REIFGRQAMN VIACEGSERI  600
ERPETYKQWQ VRNLRAGFTQ LPLNQEIVKI AKDRLQSCYH KDFVIDEDSQ WLLLGWKGRI  660
GYALSSWRAA C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein