PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g404040.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 223aa    MW: 25124.2 Da    PI: 4.4665
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g404040.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.16.1e-3871071100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+ +Cv+apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdPvyG+++ i++lqqq+  l++
  Pd.00g404040.m01   7 SCGACKFLRRKCTGECVFAPYFCYDQaADHFAAVHKVFGASNVSKLLLHLPVQNRSDAAITMSYEALARMRDPVYGCFSQIFALQQQIVYLQE 99 
                       6************************9789**************************************************************** PP

            DUF260  93 elallkee 100
                       e+++l+++
  Pd.00g404040.m01 100 EIETLGNQ 107
                       ***99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MTGLGSSCGA CKFLRRKCTG ECVFAPYFCY DQAADHFAAV HKVFGASNVS KLLLHLPVQN  60
RSDAAITMSY EALARMRDPV YGCFSQIFAL QQQIVYLQEE IETLGNQMVN FATGHSSDSF  120
SELQVFSQHD AVETQYLQSQ LPEPLLLPVM ENATANQAFN SQMDIQMPPL HEWEEVNLFG  180
DQSVPDPLER FLEGPQENLG HNPWLNETAN TRNYNKGSSW DLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.14e-58LBD family protein