PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g405740.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 458aa MW: 50156.5 Da PI: 6.9582

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g405740.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42	1.6e-13	70	116	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN +++Lr+l+Pk+ K++Ka+ L +++++k+L Pd.00g405740.m01 70 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDHVKDL 116 79***********************8.....7**************99 PP
2	Myb_DNA-binding	56.5	6.3e-18	232	276	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+W+++Ed l+++v+q+G+++W++I+ ++ gR++k+c++rw + Pd.00g405740.m01 232 GSWSPQEDSTLIKLVAQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 276 68***************************.*********985 PP
3	Myb_DNA-binding	57.2	3.9e-18	285	327	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++Ed ++v+a++++G++ W+tIar ++ gRt++ +k++w++ Pd.00g405740.m01 285 SFTPQEDNIIVRAHALHGNK-WATIARLLP-GRTDNAIKNHWNST 327 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MENCYCAGPQ GATWAPYKSA ALSNESSSFP LPWPPHASSS TQFQFCGFPN SWSAAAEGAD 60 EEDRAATASK SHSQAEKRRR DRINAQLATL RKLIPKSDKM DKAALLGSVI DHVKDLKRKA 120 MEVSKAFMVP TEMDEITIDS DPAQAAANSS SNNINMNKSR CSIVIRASVC CDDRPELFSE 180 LIQVLKGLKL TAVRADMASV GGRIKSVLVL CKDGEEDEAL CISTLKQSLK LGSWSPQEDS 240 TLIKLVAQHG PRNWSLISTG IPGRSGKSCR LRWCNQLSPT VQHKSFTPQE DNIIVRAHAL 300 HGNKWATIAR LLPGRTDNAI KNHWNSTLRR RRQLAEFSST SSDSNSAAPI RYEAGMKRQC 360 LRVSPEPDSF KADVGGDGVV ETSLTLSPPG EKEENEVVLK SEDHDDEGKC AVETEETCLL 420 TIMQRMIAQE VRNYVDSLRA EDGPASFGLQ SAALQNDP

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MENCYCAGPQ GATWAPYKSA ALSNESSSFP LPWPPHASSS TQFQFCGFPN SWSAAAEGAD  60
EEDRAATASK SHSQAEKRRR DRINAQLATL RKLIPKSDKM DKAALLGSVI DHVKDLKRKA  120
MEVSKAFMVP TEMDEITIDS DPAQAAANSS SNNINMNKSR CSIVIRASVC CDDRPELFSE  180
LIQVLKGLKL TAVRADMASV GGRIKSVLVL CKDGEEDEAL CISTLKQSLK LGSWSPQEDS  240
TLIKLVAQHG PRNWSLISTG IPGRSGKSCR LRWCNQLSPT VQHKSFTPQE DNIIVRAHAL  300
HGNKWATIAR LLPGRTDNAI KNHWNSTLRR RRQLAEFSST SSDSNSAAPI RYEAGMKRQC  360
LRVSPEPDSF KADVGGDGVV ETSLTLSPPG EKEENEVVLK SEDHDDEGKC AVETEETCLL  420
TIMQRMIAQE VRNYVDSLRA EDGPASFGLQ SAALQNDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	8e-50	MYB family protein