PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g405790.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 472aa MW: 51856.6 Da PI: 6.9531

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g405790.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42	1.7e-13	84	130	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN +++Lr+l+Pk+ K++Ka+ L +++++k+L Pd.00g405790.m02 84 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDHVKDL 130 79***********************8.....7**************99 PP
2	Myb_DNA-binding	56.5	6.5e-18	246	290	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+W+++Ed l+++v+q+G+++W++I+ ++ gR++k+c++rw + Pd.00g405790.m02 246 GSWSPQEDSTLIKLVAQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 290 68***************************.*********985 PP
3	Myb_DNA-binding	57.1	4e-18	299	341	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++Ed ++v+a++++G++ W+tIar ++ gRt++ +k++w++ Pd.00g405790.m02 299 SFTPQEDNIIVRAHALHGNK-WATIARLLP-GRTDNAIKNHWNST 341 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MESKVLEKCW LLLAMENCYC AGPQGATWAP YNSAALSNES SRFPLPWPPH ASSSTQFQFC 60 GFPNSWSAAA EGADEEDRAA TASKSHSQAE KRRRDRINAQ LATLRKLIPK SDKMDKAALL 120 GSVIDHVKDL KRKAMEVSKA FMVPTEMDEI TIDSDPAQAA ANSSSNNINM NKSRCSIVIR 180 ASVCCDDRPE LFSELIQVLK GLKLTAVRAD MASVGGRIKS VLVLCKDGEE DEALCISTLK 240 QSLKLGSWSP QEDSTLIKLV AQHGPRNWSL ISTGIPGRSG KSCRLRWCNQ LSPTVQHKSF 300 TPQEDNIIVR AHALHGNKWA TIARLLPGRT DNAIKNHWNS TLRRRRQLAE FSSTSSDSNS 360 AAPIRYEAGM KRQCLRVSPE PDSFKADVGG DGVVETSLTL SPPGEKEENE VVLKSEDHDD 420 EGKCAVETEE TCLLTIMQRM IAQEVRNYVD SLRAEDGPAS FGLQSAALQN DP

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MESKVLEKCW LLLAMENCYC AGPQGATWAP YNSAALSNES SRFPLPWPPH ASSSTQFQFC  60
GFPNSWSAAA EGADEEDRAA TASKSHSQAE KRRRDRINAQ LATLRKLIPK SDKMDKAALL  120
GSVIDHVKDL KRKAMEVSKA FMVPTEMDEI TIDSDPAQAA ANSSSNNINM NKSRCSIVIR  180
ASVCCDDRPE LFSELIQVLK GLKLTAVRAD MASVGGRIKS VLVLCKDGEE DEALCISTLK  240
QSLKLGSWSP QEDSTLIKLV AQHGPRNWSL ISTGIPGRSG KSCRLRWCNQ LSPTVQHKSF  300
TPQEDNIIVR AHALHGNKWA TIARLLPGRT DNAIKNHWNS TLRRRRQLAE FSSTSSDSNS  360
AAPIRYEAGM KRQCLRVSPE PDSFKADVGG DGVVETSLTL SPPGEKEENE VVLKSEDHDD  420
EGKCAVETEE TCLLTIMQRM IAQEVRNYVD SLRAEDGPAS FGLQSAALQN DP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-49	MYB family protein