PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g407480.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 211aa    MW: 23760.2 Da    PI: 9.5394
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g407480.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.41.4e-111151343
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                      ien+s r+  f +R+  +lKK +E+S+LCd+ +  i+++++
  Pd.00g407480.m01 11 IENDSARKKRFRRRKGSLLKKVSEISTLCDVGAFAIVYAPD 51
                      9*************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MARIKVKLAW IENDSARKKR FRRRKGSLLK KVSEISTLCD VGAFAIVYAP DSDKPDVWPS  60
PSEVKELIAK FQSIPEAERS RKMTDHETYL KETIAKLEQR LRKIKRQNYE MEMNDIMHGL  120
YKGMPMYLLE TSKISDLASF LEEKMKGISQ IMERLEKDLP PADVSSQAGR DDENVTGRSS  180
SNATGRKIGG IRLMGFDIGS SIAGDNGGGE E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-34M-type_MADS family protein