PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g412010.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27516.3 Da    PI: 8.8191
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g412010.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.26e-303181151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien   rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  Pd.00g412010.m01 31 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSS 81
                      79***********************************************96 PP
2K-box73.18e-251061931198
             K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       + ++e+ + + + + k+i+ ++ ++ +llG++Les+s++eLqq e+qLe+sl+kiR++K++ll+eqie+l++ ek+l e+n +Lr+k 
  Pd.00g412010.m01 106 QVDMEHGKDDTSSMAKKIDFIEASKQKLLGNCLESCSIEELQQTENQLERSLSKIRARKTQLLREQIEKLKEEEKNLFEQNAKLREKC 193
                       556788899999*************************************************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MKSQGFWDFS VSHISILDFA ENMVRGKTQM KRIENAASRQ VTFSKRRNGL LKKAFELSVL  60
CDAEVALIIF STRGKLYEFS SSSISNTLDR YEKRVKDQGL GSRAVQVDME HGKDDTSSMA  120
KKIDFIEASK QKLLGNCLES CSIEELQQTE NQLERSLSKI RARKTQLLRE QIEKLKEEEK  180
NLFEQNAKLR EKCGMQPLCP PSTRKDGENC AVRQPRTPDL EDVETDLVIG PPERRRSGQN  240
P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.15e-67MIKC_MADS family protein