PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g417500.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 173aa    MW: 20088.1 Da    PI: 8.6812
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g417500.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25e-07126152127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C +f+r G Ck+ ++Ck+ H++
  Pd.00g417500.m01 126 PGQPACIYFSRIGDCKFISNCKYPHPK 152
                       57899******************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MMIPPYQRDS FLKYRMEWIR LQNIYQRVSC LQLAYVMNHS VTETNAYEQH PQQKQIERTP  60
RTTWVTLFPS WALNDKGLPL GPALEYLPER SMPAPPPYVM NYSVTEANAY EQHPQQKQVE  120
QLPERPGQPA CIYFSRIGDC KFISNCKYPH PKNQTALFPS CALSDKGLPL RPG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.24e-22C3H family protein