PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g419350.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 259aa    MW: 29314.9 Da    PI: 8.6314
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g419350.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601292.2e-40181171100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvy ++g i +lq++l++l+a+
  Pd.00g419350.m01  18 PCAACKILRRRCAEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQELPESHRADAVSSMVYEANARIRDPVYDCAGAICQLQKHLSELQAQ 110
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  Pd.00g419350.m01 111 LAKTQAE 117
                       ***9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MATMSSKKLA FQSYMDSPCA ACKILRRRCA EKCVLAPYFP PTEPLKFTIA HRVFGASNII  60
KLLQELPESH RADAVSSMVY EANARIRDPV YDCAGAICQL QKHLSELQAQ LAKTQAELLN  120
MQSQQGNLIA LISRKLEKMS GAGKKVADVA FKASRKIDWE GMAKLLVSDE ARKEFASLRR  180
AFDEVNTTLQ TKFSQEPEPI DWEYYRKGIG SRLVDMYKEA YDSVQVPKYV DTVTPEYKPK  240
FDQLVENTIQ CTLVVQFPI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.18e-66LBD family protein