PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g420750.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 247aa MW: 26793 Da PI: 8.5114

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g420750.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	68.9	1.1e-21	2	94	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+p+++r+ A+ r+ +Pv+Gavg++++++++++q+ Pd.00g420750.m01 2 SCNGCRVLRKGCSESCMLRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPDSQRP---------ACGRTVNPVNGAVGLLWTGNWHVCQA 87 6********************************************************8.........89********************** PP DUF260 91 kaelall 97 ++e++l+ Pd.00g420750.m01 88 AVETVLR 94 *998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MSCNGCRVLR KGCSESCMLR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPDSQR 60 PACGRTVNPV NGAVGLLWTG NWHVCQAAVE TVLRGGTLRP IPELLGGGST SDEASDADGG 120 GVNNCTDMWR LRDPSHNSGS SSRFTSSRSA RASSPKRKRS ADDESSTKVL PLQHHADLDL 180 RLTPSLSFKP KPKPESRRAG TPSMNSEESV VTTCFESGLP DNHHHHHQYN QHSYGVGAER 240 KLLNLFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-74	LBD family protein