PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g426660.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 197aa    MW: 21601.2 Da    PI: 10.1757
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g426660.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.87.7e-252168249
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      + en  n+qvtfskRr gi+KKA ELSvLC+aevavi+fs+ gk++ y
  Pd.00g426660.m01 21 KLENLNNKQVTFSKRRSGIFKKAAELSVLCGAEVAVIVFSTAGKVFCY 68
                      67999***************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MVILRKLPKR TQGRKRIEIK KLENLNNKQV TFSKRRSGIF KKAAELSVLC GAEVAVIVFS  60
TAGKVFCYGH PNVETVLECY RSGVAPSAVS DDTAGDQNPN RVPMAEFNKE EKKIIPIVVM  120
SSSLNVQEVE HYLMSLEDVR KKVAARLHEV RILNGTLTPG ALPPVPAVHR LCHMPMMTNG  180
FGAQGGQFGG GYHGFGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-26M-type_MADS family protein