PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g427930.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 479aa MW: 50426.2 Da PI: 8.3535

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g427930.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.1	2.3e-11	49	73	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C++++rtG+C yG+rC+++H++ Pd.00g427930.m01 49 ETDCSYYLRTGICGYGSRCRYNHPR 73 568********************96 PP
2	zf-CCCH	39.5	9.4e-13	95	119	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ Pd.00g427930.m01 95 QPVCQYYMRTGTCKFGASCKYHHPK 119 689********************96 PP
3	zf-CCCH	36.3	9.7e-12	140	165	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ Pd.00g427930.m01 140 GERECSYYVKTGQCKFGATCKFHHPQ 165 789*********************97 PP
4	zf-CCCH	38.9	1.4e-12	302	328	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H+p Pd.00g427930.m01 302 PGQPECQYYMRTGDCKFGSSCRYHHPP 328 5789*********************97 PP
5	zf-CCCH	34.4	3.6e-11	350	374	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC ++a+ G Ck+G+ CkF H++ Pd.00g427930.m01 350 APLCTHYAQRGVCKFGPACKFDHPM 374 68*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MERYGRTTEG SQSDPSPEWT VPGPETGLEE SMWQLGLGPG ESYPERPNET DCSYYLRTGI 60 CGYGSRCRYN HPRDRSAVTG AARPGGLEYP ERAGQPVCQY YMRTGTCKFG ASCKYHHPKQ 120 GGSSSSPVSL NYYGYPLRQG ERECSYYVKT GQCKFGATCK FHHPQPAGIP LPVPSPAPQV 180 SPVPAAPLYQ TVQSPSVSSQ QYGVVFARPP LLPGSYVQSP YGQVLLSPGT IPFPGWSSYQ 240 APASALPSPS TQPGVGSGTV YGMSQLSPSA AAYTGMYQPI PLPSSLGLPT TSQKEHLFPE 300 RPGQPECQYY MRTGDCKFGS SCRYHHPPEV VGPKTTVALS PSGLPSRPGA PLCTHYAQRG 360 VCKFGPACKF DHPMGTLSYS PSASSLADMP VAPYPVGSSI GTLAPSSSSS STELRPELNS 420 GSGKDLVSAR MSSSLSTSSG SVGSTVSKGG ITHLGIQQSA QGSGPSTSSG SSTESHSPS

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MERYGRTTEG SQSDPSPEWT VPGPETGLEE SMWQLGLGPG ESYPERPNET DCSYYLRTGI  60
CGYGSRCRYN HPRDRSAVTG AARPGGLEYP ERAGQPVCQY YMRTGTCKFG ASCKYHHPKQ  120
GGSSSSPVSL NYYGYPLRQG ERECSYYVKT GQCKFGATCK FHHPQPAGIP LPVPSPAPQV  180
SPVPAAPLYQ TVQSPSVSSQ QYGVVFARPP LLPGSYVQSP YGQVLLSPGT IPFPGWSSYQ  240
APASALPSPS TQPGVGSGTV YGMSQLSPSA AAYTGMYQPI PLPSSLGLPT TSQKEHLFPE  300
RPGQPECQYY MRTGDCKFGS SCRYHHPPEV VGPKTTVALS PSGLPSRPGA PLCTHYAQRG  360
VCKFGPACKF DHPMGTLSYS PSASSLADMP VAPYPVGSSI GTLAPSSSSS STELRPELNS  420
GSGKDLVSAR MSSSLSTSSG SVGSTVSKGG ITHLGIQQSA QGSGPSTSSG SSTESHSPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-149	C3H family protein