PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g439950.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 470aa MW: 52517.4 Da PI: 6.828

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g439950.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.4	9e-12	190	212	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+f+++tGtCk+G++CkF+H++ Pd.00g439950.m01 190 DCSFYLKTGTCKFGSSCKFNHPR 212 5********************96 PP
2	zf-CCCH	26.1	1.4e-08	282	306	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f++r+ C +G +C+F+H+ Pd.00g439950.m01 282 GEKDCSFYMRNASCMFGTNCRFNHP 306 7889********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MLPAARLLLP VSVSVLYVLY KYLRSGRVTE LSEDIAVPLN PDNNDVVSRQ PSHLDPAILE 60 EIRKFDPAVL DEFRKFDPAL LDEFRKFDPA ALDEFRKFDP AALDVIRKLD PAIIDQIHKL 120 CVKEKVEGKE EAERNCSGRE NENGNETQSE ESGGGGGENK NENGGEVEKK VVSEERSRRH 180 HYPVRPEAGD CSFYLKTGTC KFGSSCKFNH PRRRKTNKVS MVKMKEREGL AAEKPGLTES 240 KDYSRSGGCK YEKACSFSPR REEPSVAPIL ECNFLGLPIR PGEKDCSFYM RNASCMFGTN 300 CRFNHPDPTA ARESDPPSGY GNGGSASLQG ALSSTAAPWS APRSLNDAPL YVPMVILPSQ 360 GIPSQDTEWN GYQAPAYLQE RSMPAHQPYL MNNSVTGTNV YKQYPHQQAE EFPERPGQPY 420 PPHAPFETMT RRLQMGLEVI LTLQVSRSLC DKFCAGFAIT KHMQSFVLLI

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MLPAARLLLP VSVSVLYVLY KYLRSGRVTE LSEDIAVPLN PDNNDVVSRQ PSHLDPAILE  60
EIRKFDPAVL DEFRKFDPAL LDEFRKFDPA ALDEFRKFDP AALDVIRKLD PAIIDQIHKL  120
CVKEKVEGKE EAERNCSGRE NENGNETQSE ESGGGGGENK NENGGEVEKK VVSEERSRRH  180
HYPVRPEAGD CSFYLKTGTC KFGSSCKFNH PRRRKTNKVS MVKMKEREGL AAEKPGLTES  240
KDYSRSGGCK YEKACSFSPR REEPSVAPIL ECNFLGLPIR PGEKDCSFYM RNASCMFGTN  300
CRFNHPDPTA ARESDPPSGY GNGGSASLQG ALSSTAAPWS APRSLNDAPL YVPMVILPSQ  360
GIPSQDTEWN GYQAPAYLQE RSMPAHQPYL MNNSVTGTNV YKQYPHQQAE EFPERPGQPY  420
PPHAPFETMT RRLQMGLEVI LTLQVSRSLC DKFCAGFAIT KHMQSFVLLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	215	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-64	C3H family protein