PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g439980.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 613aa MW: 65868.6 Da PI: 9.6875

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g439980.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.8	3.9e-08	130	154	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + + C+f++r+ C +G +C+F+H+ Pd.00g439980.m01 130 GKKDCSFYMRNASCMFGTNCRFNHP 154 6789********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MLKGPIGLPN PDVPPNAELS DLDLAILEEI RKLDARLDKI RKLNPALLDK IRKFDPDVHD 60 ELYNNQVSKD KMKEREGLAA EKPGQTECKD YSRSRERKYE KACSLNPGRG EPSVAPILEC 120 NFLGLPIRPG KKDCSFYMRN ASCMFGTNCR FNHPDPTAAR ESDPPSGYGN GGSASLQSAS 180 SSTAATWSAP RSLNDAPLYV PMVILHVQIG SWGNADGVWA QSEAGNKDEA SGWTKPAFIN 240 ENQNDSWKKP SGVDDNKRAS WGKADGGSTW TKQDGDATWN KQGEGSTWNK QDGSSAWNKP 300 AGDSSWSKQA GGSSWGKQAD VTAGHESGGV GNQDNGWKRA SSFGGSQSID GVNGDQPEDF 360 NNNWRGGSGR GNSDRGGFRG GRGFVDNGGF GGRGYGRRGR GRYQSGGWRN ESIDNNSSGW 420 SKGADGAARD GKRTMVEDVR TKEVAIRTIG RVGIRQWRLN ILLALRTKEQ VLIMKWAEAG 480 ETIGNHQMLL MGTNRLGGNN RLQPKKSKEP LIKTAAGTRD RAQTHKLGAG ATRVPVGTKE 540 QVQDLEAVLE SNQVLLLEQS SAASGAQSSS WNQSGEAKQG TDEGAKPTNS WGKAAAASSW 600 GKGTDGGSSK GGW

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MLKGPIGLPN PDVPPNAELS DLDLAILEEI RKLDARLDKI RKLNPALLDK IRKFDPDVHD  60
ELYNNQVSKD KMKEREGLAA EKPGQTECKD YSRSRERKYE KACSLNPGRG EPSVAPILEC  120
NFLGLPIRPG KKDCSFYMRN ASCMFGTNCR FNHPDPTAAR ESDPPSGYGN GGSASLQSAS  180
SSTAATWSAP RSLNDAPLYV PMVILHVQIG SWGNADGVWA QSEAGNKDEA SGWTKPAFIN  240
ENQNDSWKKP SGVDDNKRAS WGKADGGSTW TKQDGDATWN KQGEGSTWNK QDGSSAWNKP  300
AGDSSWSKQA GGSSWGKQAD VTAGHESGGV GNQDNGWKRA SSFGGSQSID GVNGDQPEDF  360
NNNWRGGSGR GNSDRGGFRG GRGFVDNGGF GGRGYGRRGR GRYQSGGWRN ESIDNNSSGW  420
SKGADGAARD GKRTMVEDVR TKEVAIRTIG RVGIRQWRLN ILLALRTKEQ VLIMKWAEAG  480
ETIGNHQMLL MGTNRLGGNN RLQPKKSKEP LIKTAAGTRD RAQTHKLGAG ATRVPVGTKE  540
QVQDLEAVLE SNQVLLLEQS SAASGAQSSS WNQSGEAKQG TDEGAKPTNS WGKAAAASSW  600
GKGTDGGSSK GGW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	3e-24	C3H family protein