PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g440010.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 487aa MW: 54465.2 Da PI: 7.5099

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g440010.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.7	4.7e-09	140	158	9	27
GGGTS--TTTTT-SS-SSS CS zf-CCCH 9 fartGtCkyGdrCkFaHgp 27 +++tGtCk+G++CkF+H++ Pd.00g440010.m01 140 YLKTGTCKFGPNCKFNHPR 158 89***************96 PP
2	zf-CCCH	29.2	1.5e-09	220	240	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C +++tGtC++G+rCkF+H+ Pd.00g440010.m01 220 CWSYLKTGTCNFGPRCKFNHP 240 668*****************8 PP
3	zf-CCCH	19.2	2.1e-06	456	480	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++ +G+C+ G+ CkF H+ Pd.00g440010.m01 456 GENICTQYSSYGICNSGPACKFDHP 480 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MLPAAAVRVL LPVSASVIYL IYRYFRSGRQ IESSPNTSNN DVVPPPNSGN SDVVPYPELS 60 DRDCTILEEI LKDNHVLLDK ILALEPAFLD GLRKIKPAVL REMVFDPAEL DPVIVDARDE 120 ERSRIHHYPV RFEAGDCWCY LKTGTCKFGP NCKFNHPRIT TKNNQNSFRS GGRRPNLYTT 180 PNPSDPDHEN GNGNKTQSEE RDEERSRIHH YPVRFEAGDC WSYLKTGTCN FGPRCKFNHP 240 CRRKNGKNNQ NYFRSGGCEP GNAFSFNPRR GEPSVAPVQK LNFMDLPIRP GEKECPCYMK 300 NGFCKSATNC TFNHPDPTTI GESGPPFGYI DGGPAPVQGA SSSTAWDSLC VPMIPPSQGI 360 PSRNTEWNGS QDPEYLPERS IPAPPPYVMN KGVTETNIYE QNPQQKQVEE FPERPGQPIC 420 NYFLRKGDCK YHHPKNQTAV SPSCALSDKG LPLRPGENIC TQYSSYGICN SGPACKFDHP 480 SLSTFLL

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MLPAAAVRVL LPVSASVIYL IYRYFRSGRQ IESSPNTSNN DVVPPPNSGN SDVVPYPELS  60
DRDCTILEEI LKDNHVLLDK ILALEPAFLD GLRKIKPAVL REMVFDPAEL DPVIVDARDE  120
ERSRIHHYPV RFEAGDCWCY LKTGTCKFGP NCKFNHPRIT TKNNQNSFRS GGRRPNLYTT  180
PNPSDPDHEN GNGNKTQSEE RDEERSRIHH YPVRFEAGDC WSYLKTGTCN FGPRCKFNHP  240
CRRKNGKNNQ NYFRSGGCEP GNAFSFNPRR GEPSVAPVQK LNFMDLPIRP GEKECPCYMK  300
NGFCKSATNC TFNHPDPTTI GESGPPFGYI DGGPAPVQGA SSSTAWDSLC VPMIPPSQGI  360
PSRNTEWNGS QDPEYLPERS IPAPPPYVMN KGVTETNIYE QNPQQKQVEE FPERPGQPIC  420
NYFLRKGDCK YHHPKNQTAV SPSCALSDKG LPLRPGENIC TQYSSYGICN SGPACKFDHP  480
SLSTFLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	5e-77	C3H family protein