PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g440020.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 554aa MW: 60878.6 Da PI: 4.6222

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g440020.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.8	5.7e-11	313	336	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+++++tGtCk+ ++CkF+H++ Pd.00g440020.m01 313 PDCSYYLKTGTCKFRSNCKFNHPR 336 78********************96 PP
2	zf-CCCH	30.4	6.9e-10	382	407	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++r+ C yG +C+F+H+ Pd.00g440020.m01 382 PGERDCPYYMRNLSCGYGLSCRFNHP 407 5789*********************9 PP
3	zf-CCCH	25.2	2.9e-08	481	507	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+ tG Ck+ ++Ck++H++ Pd.00g440020.m01 481 PGQPVCIYFSTTGDCKFKSNCKYHHPK 507 5789*********************96 PP
4	zf-CCCH	22.2	2.4e-07	528	552	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++ +G+C+ G+ CkF H+ Pd.00g440020.m01 528 GQNICTQYSTYGICNSGPACKFDHP 552 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence
MFPAAAVALR LLLPVSVSLY VLYKYWRSGR QTESWVPPNS GDNGVVRPKS SKNDVVPSDG 60 DLAIVEEILK NDHVFLNKIR TLDPAVLDEL LKIDPVALDA LLRIDPAVLR DSAELDPAII 120 DAICELSEKE EGDEEADWSC SRPVTESSLV IGVPTNSGNN DVVPSNSGNN DVAPSNSGNN 180 DVVPPNSANN DVVPCPELSD RDLAILEEIL KDDPVLLDEI RTHDPAVINE LRKFDPAVLR 240 EMVLDSAEVD PTIIDAIRKL CLKRKEEDEQ EAKGSCSGRE TESENENGNE ARSQERDEET 300 SRSRDYPLRP EAPDCSYYLK TGTCKFRSNC KFNHPRTTTK NNQDDFWSGG RKDGRDGSFN 360 PRSREPFAAP FVENFMGLPI RPGERDCPYY MRNLSCGYGL SCRFNHPDPT PAGESDPPSG 420 YGDGGPASLQ GASSSTAARW SAPRSLNNAP LIITPSQGIP SRNTEHNGYQ QQQVEELPQR 480 PGQPVCIYFS TTGDCKFKSN CKYHHPKNQT AVSPSCALND KGLPLRPGQN ICTQYSTYGI 540 CNSGPACKFD HPSL

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence

MFPAAAVALR LLLPVSVSLY VLYKYWRSGR QTESWVPPNS GDNGVVRPKS SKNDVVPSDG  60
DLAIVEEILK NDHVFLNKIR TLDPAVLDEL LKIDPVALDA LLRIDPAVLR DSAELDPAII  120
DAICELSEKE EGDEEADWSC SRPVTESSLV IGVPTNSGNN DVVPSNSGNN DVAPSNSGNN  180
DVVPPNSANN DVVPCPELSD RDLAILEEIL KDDPVLLDEI RTHDPAVINE LRKFDPAVLR  240
EMVLDSAEVD PTIIDAIRKL CLKRKEEDEQ EAKGSCSGRE TESENENGNE ARSQERDEET  300
SRSRDYPLRP EAPDCSYYLK TGTCKFRSNC KFNHPRTTTK NNQDDFWSGG RKDGRDGSFN  360
PRSREPFAAP FVENFMGLPI RPGERDCPYY MRNLSCGYGL SCRFNHPDPT PAGESDPPSG  420
YGDGGPASLQ GASSSTAARW SAPRSLNNAP LIITPSQGIP SRNTEHNGYQ QQQVEELPQR  480
PGQPVCIYFS TTGDCKFKSN CKYHHPKNQT AVSPSCALND KGLPLRPGQN ICTQYSTYGI  540
CNSGPACKFD HPSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-71	C3H family protein