PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g440860.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 187aa MW: 21507.6 Da PI: 10.0988

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g440860.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.8	1.4e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+ii+s++gk+y ++s Pd.00g440860.m01 9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIILSPSGKIYQFAS 59 79***********************************************86 PP
2	K-box	54.1	6.7e-19	92	167	16	91
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 +++e + L++ i+nL+ +++l Ge+L+ L ++eL+qLe+qL++++++iRs+ +++ ++i+ l+kk +el+ + Pd.00g440860.m01 92 GSNNENEELRRSIDNLEMRLKNLAGEELDMLGMQELKQLERQLKTGVERIRSQIGRVVSDNISLLKKKFHELHYAD 167 468999*****************************************************************99765 PP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIILSP SGKIYQFASH 60 DINRTIAMYR NQVSLPESNN SSFRQARTME FGSNNENEEL RRSIDNLEMR LKNLAGEELD 120 MLGMQELKQL ERQLKTGVER IRSQIGRVVS DNISLLKKKF HELHYADHAS SRILGPSAYM 180 QFFPSEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.2	2e-42	MIKC_MADS family protein