PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g449820.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 225aa    MW: 24952.6 Da    PI: 7.503
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g449820.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.15.5e-1437741350
                      HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      +++R  ++ KKA+ELS+LCd+ v+v+ ++ + ++ +++
  Pd.00g449820.m01 37 LARRMSTLQKKASELSTLCDVAVCVVSVGANREIETWP 74
                      67899********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MAPPQLKSKK PKKMKIKMKP QVLKIDANCG SVLKPALARR MSTLQKKASE LSTLCDVAVC  60
VVSVGANREI ETWPENQQEA KSILLKHKNL GKLGKKIEKG SFSARKGTDY SFLETMLEAL  120
NERIGVVMMR DGVGTKTRTT STCSFMEFYE NIMGTSVPPD PPDQQQSMLL VDQVPHHQQE  180
AYSTTNSDGF FLDDLHIAAA SPTMSSIDDY VSWLLEDHND VATSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-11M-type_MADS family protein