PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g453020.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 389aa    MW: 43670.5 Da    PI: 9.5726
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g453020.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.87.7e-203381149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      krie+k +r+vtfskR++gi+ KA ELSvL +ae+a +++s +gk++ +
  Pd.00g453020.m01 33 KRIEEKNKRHVTFSKRKKGIFNKAAELSVLSGAEIATMVVSGNGKVFCF 81
                      79*******************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    
MAKIKIPKSE IADNNNTSDG KKGSKGRRRI EIKRIEEKNK RHVTFSKRKK GIFNKAAELS  60
VLSGAEIATM VVSGNGKVFC FGTPNYDTVI NRYLGHHTAS LAAAGQPDHR ALLHGKTMRS  120
SNKQVENYVE ATRHLEAEKI SFKERTVTQF GDALQLAWNS EEREMSRFRG LLQASLNATK  180
KALTWNVEDL VPPTERYIFN FNSKDELKKW HLYSDSEYGG LSSASLEIPD TENGPNGIFS  240
GNLSLDFIEG SKLKINRSGF CGMRSKKFDG FIDLDPYDTV ALKVRGDGRC YISTIYTENW  300
VNSPGQEEDN SWQAFVFVPK DNWYIAKIPL ARYLPTWRGN VIDAEMEMNP SRVVGMSLSV  360
NAEGGLPGAR VGPGDFKLEI DWIKALRTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-14M-type_MADS family protein