PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g459570.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 380aa MW: 42664.1 Da PI: 4.5502

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g459570.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.7	9.8e-30	8	109	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+l+++C+++C++apyf +e+ +f +h +FGas+++++l+ lp +er a ++++eA+ara dP y +v+ il+lq+q+ + +a Pd.00g459570.m01 8 PCGACKFLKKRCKRGCIFAPYFMHEEaITDFSSIHNVFGASKMSRILSMLPMSERAVASWTMTFEAHARAVDPTYDCVSYILDLQEQVLNIQA 100 7*******************999856************************************************************* PP DUF260 93 elallkeel 101 +l++++e+l Pd.00g459570.m01 101 QLDKAHEQL 109 ***9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MSSRTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAITDFSS IHNVFGASKM SRILSMLPMS 60 ERAVASWTMT FEAHARAVDP TYDCVSYILD LQEQVLNIQA QLDKAHEQLA RAVAPVTNPN 120 QDLENSNEQS EVANPTEQAA VAKPTEFESL PQFSFTHTNN VDNENMNLNY HVSGSYKNTV 180 NIPTENVADG WVNNEGTSSM SFFDMEWSFE DVDELLVDPW CPNMGKVQAL TASTPAADEV 240 LEKCQLRDAI REKEEGLDIL VVQDGTNWSM GQRQLFCMGR ALLKRSRILV LDEATASMDN 300 ATNYILQKTI RTEFADCTVI TVAHRIPTVM DCTKVLAISD GKLVEYDEPM KLMNNEGSLF 360 GQLVKEYWSR SANARVSLDD

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MSSRTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAITDFSS IHNVFGASKM SRILSMLPMS  60
ERAVASWTMT FEAHARAVDP TYDCVSYILD LQEQVLNIQA QLDKAHEQLA RAVAPVTNPN  120
QDLENSNEQS EVANPTEQAA VAKPTEFESL PQFSFTHTNN VDNENMNLNY HVSGSYKNTV  180
NIPTENVADG WVNNEGTSSM SFFDMEWSFE DVDELLVDPW CPNMGKVQAL TASTPAADEV  240
LEKCQLRDAI REKEEGLDIL VVQDGTNWSM GQRQLFCMGR ALLKRSRILV LDEATASMDN  300
ATNYILQKTI RTEFADCTVI TVAHRIPTVM DCTKVLAISD GKLVEYDEPM KLMNNEGSLF  360
GQLVKEYWSR SANARVSLDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	9e-41	LBD family protein