PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g463680.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 86aa    MW: 10227 Da    PI: 8.6887
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g463680.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.4e-12328227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      kte C++++++G+C+y   C+FaHgp
  Pd.00g463680.m01  3 KTEMCNTWMASGICPYERACQFAHGP 28
                      9***********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    
MLKTEMCNTW MASGICPYER ACQFAHGPLE LRIVFRHPRY KTKSCLNFKR EGCMYGYRCQ  60
FRHDRGQLIM VVFDHYVDSK VPIVDC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.22e-23C3H family protein