PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g469110.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 208aa    MW: 23959.3 Da    PI: 9.7095
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g469110.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.31.1e-29352251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gklye++s
  Pd.00g469110.m01  3 RIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 52
                      8***********************************************86 PP
2K-box83.44.9e-2870165497
             K-box   4 ssgks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                       +++++   +++++++l+qe++ + k+ie L+ ++R+llGe+L+s++++eLq++eqqLe+s++++R++K ++++eqie+l++k k+l  en++L
  Pd.00g469110.m01  70 HTNNKpvSTDQNMQHLKQESSSMMKQIELLEVSKRKLLGEGLGSCTIEELQEIEQQLERSVSNVRARKAQVFKEQIEQLKEKGKALAAENERL 162
                       4555567899*********************************************************************************** PP

             K-box  95 rkk 97 
                        +k
  Pd.00g469110.m01 163 IEK 165
                       988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MRRIENATSR QVTFSKRRSG LLKKAFELSV LCDAEVALII FSPRGKLYEF ASSSMQTTIE  60
RYQKHAKDNH TNNKPVSTDQ NMQHLKQESS SMMKQIELLE VSKRKLLGEG LGSCTIEELQ  120
EIEQQLERSV SNVRARKAQV FKEQIEQLKE KGKALAAENE RLIEKCGRIQ PRQASNEQRE  180
NLAYIESSQS SDVETELFIG LPERRMKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.14e-82MIKC_MADS family protein