PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g469450.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 750aa MW: 81173.6 Da PI: 8.8468

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g469450.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	70	3e-22	418	463	1	46
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 d epgrCrRtDGKkWRC ++v++++k+C+ H+hrgr+rsrk++e+s Pd.00g469450.m01 418 DHEPGRCRRTDGKKWRCNKNVVPDQKYCQQHMHRGRQRSRKPVENS 463 679***************************************9985 PP
2	WRC	66.2	4.6e-21	630	671	2	43
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 epgrCrRtDGKkWRC+r+vl+++k+C H+hrg +r+ k + Pd.00g469450.m01 630 LEPGRCRRTDGKKWRCRRDVLPDQKYCGQHIHRGAKRQMKDF 671 59************************************9976 PP
3	QLQ	54.7	3.1e-19	351	385	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +Ta+Ql++L++Q+l+yK++aan+PvP +L+++++k Pd.00g469450.m01 351 LTATQLHELEQQALIYKHFAANLPVPFHLVLPVWK 385 7********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence
MSLPCVKQTD VITCKVAVAW GAGKPLVIEE VNVNPPQAME MRIKVVCTSL CRSDITAWES 60 QDFGMSISKT EVNLRRLLAA APQQQNQSKL VHYVATLREQ VEQLAEERTP EGLPRVSKAV 120 LSDYSEKIEA IASKLAAPPP DIQAPKEPLA RISVKANSSD TGDNQIPPSP GLRRRFGLTS 180 NSEDGTREIL NVDSSAPVKL DAAAQAHIEK HRKLQEDLTD EMVGLARQLK ESSLMMNHSL 240 QDTEKILDST EKAVESSLAS TGHATTRATN IYSKTSKTTC FTWLVIQIEL GFLSAPLLKQ 300 QFDLLVMTME EEGGGKVKLG LGIGVDCYGD DHNGTEEVVG KKKKKYGGGG LTATQLHELE 360 QQALIYKHFA ANLPVPFHLV LPVWKSVAAS FGSSNAAAIN RQYPSFVGFS ATGFDYRDHE 420 PGRCRRTDGK KWRCNKNVVP DQKYCQQHMH RGRQRSRKPV ENSEVASPSS TKTPKNSEGE 480 LGNSKTNLQI STPKGLQLMA QSYNYVSVSQ GTTMASSGCH ECKKNIRPVT TTSIANIPAN 540 RSASTNPAAV ATTTIAGPTT ATNSSTNENS LNIGVKYSSS NHAGGNCMIR GSSMNVVNIS 600 PGLGFSPKSV LQALLGCNGS YFDNRSGVEL EPGRCRRTDG KKWRCRRDVL PDQKYCGQHI 660 HRGAKRQMKD FQPVAVPSSS AAAMNTAQLS QTTAICRKTN CAIPNTNLSI SIPANPPLAR 720 NDEGSNSSSD SDTTLTDTSL TACDSSYVSA

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence

MSLPCVKQTD VITCKVAVAW GAGKPLVIEE VNVNPPQAME MRIKVVCTSL CRSDITAWES  60
QDFGMSISKT EVNLRRLLAA APQQQNQSKL VHYVATLREQ VEQLAEERTP EGLPRVSKAV  120
LSDYSEKIEA IASKLAAPPP DIQAPKEPLA RISVKANSSD TGDNQIPPSP GLRRRFGLTS  180
NSEDGTREIL NVDSSAPVKL DAAAQAHIEK HRKLQEDLTD EMVGLARQLK ESSLMMNHSL  240
QDTEKILDST EKAVESSLAS TGHATTRATN IYSKTSKTTC FTWLVIQIEL GFLSAPLLKQ  300
QFDLLVMTME EEGGGKVKLG LGIGVDCYGD DHNGTEEVVG KKKKKYGGGG LTATQLHELE  360
QQALIYKHFA ANLPVPFHLV LPVWKSVAAS FGSSNAAAIN RQYPSFVGFS ATGFDYRDHE  420
PGRCRRTDGK KWRCNKNVVP DQKYCQQHMH RGRQRSRKPV ENSEVASPSS TKTPKNSEGE  480
LGNSKTNLQI STPKGLQLMA QSYNYVSVSQ GTTMASSGCH ECKKNIRPVT TTSIANIPAN  540
RSASTNPAAV ATTTIAGPTT ATNSSTNENS LNIGVKYSSS NHAGGNCMIR GSSMNVVNIS  600
PGLGFSPKSV LQALLGCNGS YFDNRSGVEL EPGRCRRTDG KKWRCRRDVL PDQKYCGQHI  660
HRGAKRQMKD FQPVAVPSSS AAAMNTAQLS QTTAICRKTN CAIPNTNLSI SIPANPPLAR  720
NDEGSNSSSD SDTTLTDTSL TACDSSYVSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	5e-30	GRF family protein