PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g470630.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 156aa MW: 17203.2 Da PI: 7.18

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g470630.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	3.9e-05	24	46	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H Pd.00g470630.m01 24 YKCETCNKVFKSYQALGGHRASH 46 9************9999999888 PP
2	zf-C2H2	13	0.00031	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H Pd.00g470630.m01 79 HECPVCFRVFSSGQALGGHKRSH 101 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence
MEDSDESEEQ LVKFPRTRTT RGKYKCETCN KVFKSYQALG GHRASHKKIK ASNPNPIYEH 60 ELEQENNAGA SSVAERKTHE CPVCFRVFSS GQALGGHKRS HVTGSAAAAA THVKNLNKLG 120 DNLIDLNLPA PVEDDEISQI ELSAVSDAEF VNPIRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	4e-41	C2H2 family protein