PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g472310.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 155aa    MW: 17269.8 Da    PI: 6.5016
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g472310.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.57.6e-3281091101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+l+++C+++C++apyf +e+   +f  +h +FGa++++++l+ lp +er  a  ++++eA+ara dP yG+v+ il+lq+q+ + +a
  Pd.00g472310.m01   8 PCGACKFLKKRCKRGCIFAPYFMHEEaITDFSSIHNVFGARKMSRILSMLPMSERAVASWTMTFEAHARAVDPTYGCVSYILDLQEQVLNIQA 100
                       7*********************999856***************************************************************** PP

            DUF260  93 elallkeel 101
                       +la+++e+l
  Pd.00g472310.m01 101 QLAEAHEQL 109
                       *****9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MSSRTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAITDFSS IHNVFGARKM SRILSMLPMS  60
ERAVASWTMT FEAHARAVDP TYGCVSYILD LQEQVLNIQA QLAEAHEQLA RAVAPVANPN  120
QDLENSNEQS EVANPTEQAA VAKPTEFEMG VIKIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-38LBD family protein