PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g474760.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 329aa    MW: 37003.8 Da    PI: 8.7657
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g474760.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.7e-191562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+ Ed++l+ +v+++G g+W + +++ g+ R++k+c++rw++yl
  Pd.00g474760.m01 15 KGPWTPAEDQKLLAYVQKHGHGNWQSLPQRAGLQRCGKSCRLRWRNYL 62
                      79*********************************************7 PP
2Myb_DNA-binding47.34.6e-1568111146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+++ +Ed+ +++++++lG++ W++I ++++ +Rt++++k++w++
  Pd.00g474760.m01  68 RGNFSLQEDQTIIQLHALLGNR-WSAITAHLP-KRTDNEVKNYWHS 111
                       89********************.*********.***********86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MGKSTHCVAS SGMKKGPWTP AEDQKLLAYV QKHGHGNWQS LPQRAGLQRC GKSCRLRWRN  60
YLRPDIKRGN FSLQEDQTII QLHALLGNRW SAITAHLPKR TDNEVKNYWH SRLKKRLALK  120
GYDPVTHKPK NTIFGFANGS TDDPKTGSNL NHIAQWESVR LQAEAIYVRD SELHKQAYHP  180
YNNNDIFATS SILSCYNKDF GPTDQLFGQN APQCLDILRA SEIILMSNYS KATCSQDHVN  240
SFGNRLASDF EPLIISAISN NGSSLMDCFV HKPVGQSFDE NYGTSITEPF ATVHHNMGFK  300
NNGACLEDFG LWEIIMQGKK DCPISGISM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.12e-83MYB family protein