PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g476690.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 110aa    MW: 12882.9 Da    PI: 9.0691
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g476690.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.86.1e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+i+n++ rqvtfskRr g++KKA+ELS+LCdae+a+++fs tgkl+e+ s
  Pd.00g476690.m01  9 KKIDNTTARQVTFSKRRRGLFKKAQELSTLCDAEIALVVFSATGKLFEFTS 59
                      68***********************************************75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    
MTRRKIQIKK IDNTTARQVT FSKRRRGLFK KAQELSTLCD AEIALVVFSA TGKLFEFTSS  60
SVQQVIERHD LLSSNFDRLN HPSLELQVYM YDVVDYYFFL AMSFFVLDDI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.15e-44MIKC_MADS family protein