PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g480380.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 634aa MW: 70399.2 Da PI: 8.1882

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g480380.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.2	1.6e-11	1	47	38	86
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 mre+gf rsp++C++kw+nl k++kk +++ k + +s +++y+++l+ Pd.00g480380.m01 1 MREKGFDRSPTMCTDKWRNLLKEFKKARHQVKVG--SRSAKMSYYEDLQ 47 89****************************98..45568***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
MREKGFDRSP TMCTDKWRNL LKEFKKARHQ VKVGSRSAKM SYYEDLQDLL RDRTNNNHNA 60 ASTDAAAASA AAYKSPTPPK LESFVRFCDK GLEDSGIPFG PMEATDRSAL NLERQLDHDG 120 DPLAITAADT VAVSGVPPWN WREGPGNGGE GHSSYCGKII TVKLGEYTRR IGIDGTADAI 180 KEAIKSAFRI RTKRAFWLED EDQVVRSLDR DMPLGNYTLH LDEGITIKLC LYDDSDRIVR 240 TEEITLYTED DFRDFLARRG LMGLRELSGY RRIDTLDELQ SGAMYQGIGI FQMVLIWCYV 300 GEGFGRIGRL VARVALQRDD VELVAVNDPF INIEYMSYMF KYDSVHGQWK HHELKAKDDK 360 TLLFGDKPVR VFASRPKLAR LNSNWIVHSF RLGSPKGSRG ARLVLNLWLS PPECSLIKEK 420 ASLHLKGGAK KVVISAPSKD APMFVVGVNE KDYTPDLNIV SNASCTTNCL APLAKVVHDK 480 FGIVEGLMTT VHSITATQKT VDGPSMKDWR GGRAAATNII PSSTGAAKAV GKVLPALNGK 540 LTGMAFRVPT VDVSVVDLTV RLEKKATYDE IKDAIKKESE GSMKGILGYT DEDVVSTDFV 600 GDNRSSIFDA KAGIALNDNF VKLVSWYDNE WGYR

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

MREKGFDRSP TMCTDKWRNL LKEFKKARHQ VKVGSRSAKM SYYEDLQDLL RDRTNNNHNA  60
ASTDAAAASA AAYKSPTPPK LESFVRFCDK GLEDSGIPFG PMEATDRSAL NLERQLDHDG  120
DPLAITAADT VAVSGVPPWN WREGPGNGGE GHSSYCGKII TVKLGEYTRR IGIDGTADAI  180
KEAIKSAFRI RTKRAFWLED EDQVVRSLDR DMPLGNYTLH LDEGITIKLC LYDDSDRIVR  240
TEEITLYTED DFRDFLARRG LMGLRELSGY RRIDTLDELQ SGAMYQGIGI FQMVLIWCYV  300
GEGFGRIGRL VARVALQRDD VELVAVNDPF INIEYMSYMF KYDSVHGQWK HHELKAKDDK  360
TLLFGDKPVR VFASRPKLAR LNSNWIVHSF RLGSPKGSRG ARLVLNLWLS PPECSLIKEK  420
ASLHLKGGAK KVVISAPSKD APMFVVGVNE KDYTPDLNIV SNASCTTNCL APLAKVVHDK  480
FGIVEGLMTT VHSITATQKT VDGPSMKDWR GGRAAATNII PSSTGAAKAV GKVLPALNGK  540
LTGMAFRVPT VDVSVVDLTV RLEKKATYDE IKDAIKKESE GSMKGILGYT DEDVVSTDFV  600
GDNRSSIFDA KAGIALNDNF VKLVSWYDNE WGYR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25990.1	1e-115	Trihelix family protein