PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g480850.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 186aa    MW: 21780.5 Da    PI: 10.0551
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g480850.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.25.1e-191353343
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                      i+++  r+vtf kR+ng++KKA+EL +LCd++v+ i++ ++
  Pd.00g480850.m01 13 IQDDKARKVTFRKRKNGLFKKAFELTTLCDVKVCTIVYEKK 53
                      8999*********************************9765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MGRRKTKLAL ELIQDDKARK VTFRKRKNGL FKKAFELTTL CDVKVCTIVY EKKSEGKLAP  60
PQTFPAKFEE VKEIIDKYKS NSSKIKKVQN LADFYATQTM QVKKEIVKLR TKSYEEKYPT  120
WDDRLNEYSL DQMHELLNNL EAKIQAAHKI HNMMMIESKK PAIQDYIPPM VSEYPLIVNF  180
LSNSLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.18e-21M-type_MADS family protein