PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g486840.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 392aa    MW: 42833.2 Da    PI: 6.5533
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g486840.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027358380123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C++C++ F++  +L  H++ H
  Pd.00g486840.m01 358 YTCKICKREFPNYNSLGGHMSFH 380
                       9*******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    
MDGQQDNAIP PFDEAWFDVA NPCGKEFELP NASSPIHPRW SDNSNNLVFL QDQQLHTPDI  60
LENSYELETI RPCAGNQVDS CPIMEMGTSI ANFVPIVNPQ EGTSIGNHKV HFPRSTGVLK  120
SEFEGAFPEV NQHVYAPTSA SYSWKGVDIN FPLRNQESYA VNSTNSPSIS STECLCLENN  180
PTHAPRFPNT SGFGPSVYIP PSKQLTHFCT SSNAFRLNSD DYIINDHVCS GFHFTILGLI  240
SSSGSSSSFG SSGCRPVRNQ EIRSSSFTDS PSLQNGLSVR SNQEAYKFGG SANGDINHGP  300
SHLQAVSHGT GITSNVPVPV ENQVETSTRV PQSNCHSSEN NQTFGPSSSK NGRCDVKYTC  360
KICKREFPNY NSLGGHMSFH AKMKKAKRKL DS