PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g486940.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 365aa    MW: 39810.9 Da    PI: 8.6335
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g486940.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.63.8e-32189245158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +k rkpylheSRh+hA+rR+Rg+gGrF
  Pd.00g486940.m01 189 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKVRKPYLHESRHQHAMRRARGTGGRF 245
                       69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MPKLNCSLAV ELTILTNREI LRFRGPKSRV FIWDWLFLSA KLGVGVYLRI FEACSQRRNA  60
SNSSSLECPN GGSESNDDRS LSNDEPNEGD DDDATKDSQI TSPRSAGNDG QERQNVPHVG  120
STVPTVRDDC LAQPPQLELV GHSIACASNP YQDPYYAGMM AAYGHQPLGY PPFLGMPHAR  180
MPLPLEMAQE PVYVNAKQYQ GILRRRQARA KAELERKLIK VRKPYLHESR HQHAMRRARG  240
TGGRFAKKTN GDKSNSTGQE KGTGSGPAHS SQSGSSSGSE PFPSDSAETW NSSNSQQEGR  300
GSQVHDAYSA HNYANGSGCF QTHGGLQASM YASYSGKRGE EGDCTGQQRG SISSSQASQR  360
RLAIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-80NF-YA family protein