PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g490600.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 487aa MW: 51435.4 Da PI: 8.5334

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g490600.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35	2.4e-11	49	73	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C++++rtG+C yG+rC+++H++ Pd.00g490600.m02 49 ETDCSYYLRTGICGYGSRCRYNHPR 73 568********************96 PP
2	zf-CCCH	39.5	9.6e-13	95	119	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ Pd.00g490600.m02 95 QPVCQYYMRTGTCKFGASCKYHHPK 119 689********************96 PP
3	zf-CCCH	36.2	9.9e-12	140	165	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ Pd.00g490600.m02 140 GERECSYYVKTGQCKFGATCKFHHPQ 165 789*********************97 PP
4	zf-CCCH	38.9	1.5e-12	302	328	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H+p Pd.00g490600.m02 302 PGQPECQYYMRTGDCKFGSSCRYHHPP 328 5789*********************97 PP
5	zf-CCCH	33.5	6.9e-11	359	382	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +lC ++a+ G Ck+G+ CkF H++ Pd.00g490600.m02 359 PLCTHYAQRGVCKFGPACKFDHPM 382 89********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MERYGRTTEG SQSDPSPEWT VPGPETGLEE SMWQLGLGPG ESYPERPNET DCSYYLRTGI 60 CGYGSRCRYN HPRDRSAVTG ATRPGGLEYP ERAGQPVCQY YMRTGTCKFG ASCKYHHPKQ 120 GGSSSSPVSL NYYGYPLRQG ERECSYYVKT GQCKFGATCK FHHPQPAGIP LPVPSPAPQV 180 SPVPAAPLYQ TVQSPSVSSQ QYGVVFARPP LLPGSYVQSP YGQVLLSPGT IPFPGWSPYQ 240 APASALPSPS TQPGVGSGTL YGMSQLSPSA AAYTGMYQPI PLPSSLGLPT TSQKEHLFPE 300 RPGQPECQYY MRTGDCKFGS SCRYHHPPEV VGPKTTVALS PSGLPSRPVS RPYKSHGAPL 360 CTHYAQRGVC KFGPACKFDH PMGTLSYSPS ASSLADMPVA PYPVGSSIGT LAPSSSSSST 420 ELRPELNSGS GKDLVSARMS SSLSTSSGSV GSTVSKGGIT HLGIQQSAQG SGPSTSSGSS 480 TESHSPS

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MERYGRTTEG SQSDPSPEWT VPGPETGLEE SMWQLGLGPG ESYPERPNET DCSYYLRTGI  60
CGYGSRCRYN HPRDRSAVTG ATRPGGLEYP ERAGQPVCQY YMRTGTCKFG ASCKYHHPKQ  120
GGSSSSPVSL NYYGYPLRQG ERECSYYVKT GQCKFGATCK FHHPQPAGIP LPVPSPAPQV  180
SPVPAAPLYQ TVQSPSVSSQ QYGVVFARPP LLPGSYVQSP YGQVLLSPGT IPFPGWSPYQ  240
APASALPSPS TQPGVGSGTL YGMSQLSPSA AAYTGMYQPI PLPSSLGLPT TSQKEHLFPE  300
RPGQPECQYY MRTGDCKFGS SCRYHHPPEV VGPKTTVALS PSGLPSRPVS RPYKSHGAPL  360
CTHYAQRGVC KFGPACKFDH PMGTLSYSPS ASSLADMPVA PYPVGSSIGT LAPSSSSSST  420
ELRPELNSGS GKDLVSARMS SSLSTSSGSV GSTVSKGGIT HLGIQQSAQG SGPSTSSGSS  480
TESHSPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-148	C3H family protein