PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g499420.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 275aa    MW: 29993 Da    PI: 7.5069
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g499420.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.47e-221662349
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       en+s  qvtfskRr g++KKA+EL++LC+ae+a+i+fs+  k++ +
  Pd.00g499420.m01 16 MENDSHLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFCF 62
                      69**************************************9998766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MVKKTRGRQK VDMVKMENDS HLQVTFSKRR SGLFKKASEL CTLCGAEIAI IVFSPGKKVF  60
CFGHPGIDTL LDRFEGTVPR QILNSETQKL IDGYRIAGLC EITDELTRVL EVLEEERKWG  120
DVLTQSMKAK QEGKWWQRPV EEMELDQLEA LKASLLELKS KVADEAKLRL SAAESANLAH  180
NPNFCVGSSS SSAAAQNANP AHNNFFAGSS ASRAVAGPSG LQGLLNPDIN NVGFNFNGND  240
HVMQAPHQPN NVGFNGNPNA MPLSGWNPNL GGGFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-46M-type_MADS family protein