PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g504020.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 411aa MW: 45616.4 Da PI: 9.7314

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g504020.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.1e-05	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g504020.m01 71 FVCEICNKGFQRDQNLQLHRRGH 93 89*******************88 PP
2	zf-C2H2	12.4	0.00046	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Pd.00g504020.m01 147 WKCDKCSKKYAVQSDWKAHSKTC 169 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MQMMSGDGFS IIPSAIDGFA QEHQLNANPS SQKPNPNNPV AKKKRNLPGT PDPDAEVVAL 60 SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRLNKEVKKK VYICPEKSCV 120 HHDPSRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TREYKCDCGT 180 LFSRKDSFIT HRAFCDALTE ESARLTTSVA GAATNLNFGN ETMLNNTMMH NGHAVQDDVS 240 QISQYGQGLI RQDFNGLDHH HQQHEKPSLS LWLNQQQANS NSHQLNLMDN MAANPNQLYV 300 TSSSSTAFPD MAQMPSANNL NQLFGSPNAM STFGSSNINL FGLGSASSST STSAANNLSL 360 SSPIQEGGIH KGNSNLELQL QYEPKSIKRA APNCSKCKPI RRCKLKHKFY S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MQMMSGDGFS IIPSAIDGFA QEHQLNANPS SQKPNPNNPV AKKKRNLPGT PDPDAEVVAL  60
SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRLNKEVKKK VYICPEKSCV  120
HHDPSRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TREYKCDCGT  180
LFSRKDSFIT HRAFCDALTE ESARLTTSVA GAATNLNFGN ETMLNNTMMH NGHAVQDDVS  240
QISQYGQGLI RQDFNGLDHH HQQHEKPSLS LWLNQQQANS NSHQLNLMDN MAANPNQLYV  300
TSSSSTAFPD MAQMPSANNL NQLFGSPNAM STFGSSNINL FGLGSASSST STSAANNLSL  360
SSPIQEGGIH KGNSNLELQL QYEPKSIKRA APNCSKCKPI RRCKLKHKFY S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-104	C2H2 family protein