PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g506870.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 715aa MW: 79275.6 Da PI: 5.8741

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g506870.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	79.6	3.1e-25	158	259	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+ltpsd++++g +++pk+ a+e+ ++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv a++L +gD ++F + Pd.00g506870.m01 158 FNKTLTPSDTSTHGGFSVPKRQADEClppldmsQQPP--VQELIARDLQGFEWHFRHIFRGQPKRHLLTSGWSTFVTAKRLVAGDACIFV--R 246 89***************************744444..458********************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++el+v+++r+ Pd.00g506870.m01 247 GENGELRVGIRRA 259 49999****97 PP
2	Auxin_resp	103.9	2e-34	284	366	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha st+++F+v+Y+P++s++ F++++++++k+ k+ +s+GmRf+m fe+++++e+rl+Gt+ +++d d +rWp S+Wr+Lk Pd.00g506870.m01 284 AFHANSTGTMFTVYYRPWTSPAAFIIPYDQYMKSAKNDYSIGMRFRMCFEGDECAEKRLAGTILDIEDNDCIRWPSSEWRCLK 366 67999****************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence
MAPRTTAGVE GLGPTTVNIA ERESSGCSDG SAFPADAAAA ANKNKRGEKD DSYTRLWHAC 60 AGPNVYVPRP GEKVFYFPQG HMEQVEAYAN EDGKMEMPIY NLPSKILCNV VCVLLKAEVH 120 TDEVFAQITL LPLTEQEQLS LDEENNQPVP QSTSTRSFNK TLTPSDTSTH GGFSVPKRQA 180 DECLPPLDMS QQPPVQELIA RDLQGFEWHF RHIFRGQPKR HLLTSGWSTF VTAKRLVAGD 240 ACIFVRGENG ELRVGIRRAN KKQDNASTAL ISGHSMQHGI LASAFHANST GTMFTVYYRP 300 WTSPAAFIIP YDQYMKSAKN DYSIGMRFRM CFEGDECAEK RLAGTILDIE DNDCIRWPSS 360 EWRCLKVQWD ASSDTNLHPE RLSPWNIMPL QPNKRAHVPD LMSPGFPNLA TNGLLPIPVE 420 YTPPRQKKVF QGQEISDPPA HEPGTQKPPL LPQFIPPSNP DWNYTQLGLE NNPLHDPLFQ 480 CPGSAIAPSL TNQWPPKFNF GVLDSVEFRR SMSVPNIKSS GSQDSRAFKP RSEIEAPLVQ 540 PNSRGTTMLF GVNIVTSHSE LPSPQVVTSS ELFSPCSITP ISQSSVSETI QISETSKSVS 600 GVLSAKQCKN CCSVTNRSCI KVLKYGAPVG RSVDLTRFDG YGELISELDQ MFDFKGSLID 660 GSSGWQVTYM DDEGDMMLIG DYLWHEFLSM VQKLYICPKE EIDRLNPGSP NATSL

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence

MAPRTTAGVE GLGPTTVNIA ERESSGCSDG SAFPADAAAA ANKNKRGEKD DSYTRLWHAC  60
AGPNVYVPRP GEKVFYFPQG HMEQVEAYAN EDGKMEMPIY NLPSKILCNV VCVLLKAEVH  120
TDEVFAQITL LPLTEQEQLS LDEENNQPVP QSTSTRSFNK TLTPSDTSTH GGFSVPKRQA  180
DECLPPLDMS QQPPVQELIA RDLQGFEWHF RHIFRGQPKR HLLTSGWSTF VTAKRLVAGD  240
ACIFVRGENG ELRVGIRRAN KKQDNASTAL ISGHSMQHGI LASAFHANST GTMFTVYYRP  300
WTSPAAFIIP YDQYMKSAKN DYSIGMRFRM CFEGDECAEK RLAGTILDIE DNDCIRWPSS  360
EWRCLKVQWD ASSDTNLHPE RLSPWNIMPL QPNKRAHVPD LMSPGFPNLA TNGLLPIPVE  420
YTPPRQKKVF QGQEISDPPA HEPGTQKPPL LPQFIPPSNP DWNYTQLGLE NNPLHDPLFQ  480
CPGSAIAPSL TNQWPPKFNF GVLDSVEFRR SMSVPNIKSS GSQDSRAFKP RSEIEAPLVQ  540
PNSRGTTMLF GVNIVTSHSE LPSPQVVTSS ELFSPCSITP ISQSSVSETI QISETSKSVS  600
GVLSAKQCKN CCSVTNRSCI KVLKYGAPVG RSVDLTRFDG YGELISELDQ MFDFKGSLID  660
GSSGWQVTYM DDEGDMMLIG DYLWHEFLSM VQKLYICPKE EIDRLNPGSP NATSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.2	1e-167	ARF family protein