PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g507110.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 472aa MW: 50610 Da PI: 8.919

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g507110.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.1	4.5e-11	45	71	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG rC+++H++ Pd.00g507110.m01 45 PGVPNCVYYMRTGFCGYGIRCRYNHPR 71 5789*********************96 PP
2	zf-CCCH	40.9	3.4e-13	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Pd.00g507110.m01 92 EPICQYYLKTGTCKFGASCKFHHPK 116 799********************96 PP
3	zf-CCCH	35.5	1.7e-11	139	162	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++++tG+Ck+G +CkF+H++ Pd.00g507110.m01 139 NECSYYLKTGQCKFGITCKFHHPQ 162 68********************97 PP
4	zf-CCCH	36.9	6.1e-12	293	319	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H++ Pd.00g507110.m01 293 PGEPECQYYLKTGDCKYGPSCRYHHPR 319 5799*********************96 PP
5	zf-CCCH	35.5	1.7e-11	340	364	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C f++++G+Ck+G++CkF H+ Pd.00g507110.m01 340 GVQPCTFYLQNGHCKFGSTCKFDHP 364 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MELYGRSPAR NGSNQEWSPG AGETGLEEQM WQLGLTSSES YPERPGVPNC VYYMRTGFCG 60 YGIRCRYNHP RDRAAVVAAV RATGDYPERV GEPICQYYLK TGTCKFGASC KFHHPKHGGG 120 SLSRAPLNIY GLPLRLGENE CSYYLKTGQC KFGITCKFHH PQPAGTTIPS SAPQFYPSVQ 180 SPSVPMAEQF GGASTGLRVP RPPLLPGSYV QGTYGPVLIS PGVVPIQGWS PYSAPLSPVL 240 SPGAQPTVGA TSLYGVTQLS SPTHGLARPY TSVPSAVGPS SSSPSEQVFP ERPGEPECQY 300 YLKTGDCKYG PSCRYHHPRD RVVPRTNCLL SPIGLPLRPG VQPCTFYLQN GHCKFGSTCK 360 FDHPIGTMRY NPSASSLVDM PVTPYPVGSL LATLAPSSSS TDLRPELISS SKKDTYSTRV 420 PSSGNTSSSS VGMIFSQSGS VSLSDVQHTS QTSVPLSSSR STRQGGEVRR SS

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MELYGRSPAR NGSNQEWSPG AGETGLEEQM WQLGLTSSES YPERPGVPNC VYYMRTGFCG  60
YGIRCRYNHP RDRAAVVAAV RATGDYPERV GEPICQYYLK TGTCKFGASC KFHHPKHGGG  120
SLSRAPLNIY GLPLRLGENE CSYYLKTGQC KFGITCKFHH PQPAGTTIPS SAPQFYPSVQ  180
SPSVPMAEQF GGASTGLRVP RPPLLPGSYV QGTYGPVLIS PGVVPIQGWS PYSAPLSPVL  240
SPGAQPTVGA TSLYGVTQLS SPTHGLARPY TSVPSAVGPS SSSPSEQVFP ERPGEPECQY  300
YLKTGDCKYG PSCRYHHPRD RVVPRTNCLL SPIGLPLRPG VQPCTFYLQN GHCKFGSTCK  360
FDHPIGTMRY NPSASSLVDM PVTPYPVGSL LATLAPSSSS TDLRPELISS SKKDTYSTRV  420
PSSGNTSSSS VGMIFSQSGS VSLSDVQHTS QTSVPLSSSR STRQGGEVRR SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein