PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g509590.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 728aa MW: 80554.5 Da PI: 7.1713

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g509590.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	305	325	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Pd.00g509590.m01 305 PCPEFRK-GACRQGDACEYAHG 325 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence
MPSRILKCAK RNNIKLRTDY LTPRLQIQPR QTISRDKTVE KSNSTRLTNL HVHSSSPFMH 60 ELVTAEEELG FLSHSVFCSF YHFSVVRKGE ISMCSGSKRK PSSTDLIMER EKQEGMRYSF 120 SILLELSASD DLDGFKRAVE EEGHDVDEAS YWYGRLIGSK KMGFEERTPL MIAAMFGDLI 180 APAYSSTFNS RKKALEVMLK GVPSIDQPFD FSEQMVYETE GQEQQEITTP RASKDGTEKK 240 EYPIDLSLPD IKNGIYSTDE FRMYTFKVKP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH 300 YSCVPCPEFR KGACRQGDAC EYAHGIFECW LHPAQYRTRI CKDETGCTRR VCFFAHKPEE 360 LRPLYASTGS AVPSPRSFSA NASSLDMGSI SPLSLNSPSM LIPPASTPPM TPSGASSPRS 420 GNMWQNQPNI APPTLQLPGS RLKSTLSARD MDLDIELLSL ESHRRRQQRL IDEISGSPSS 480 WNTGLSSPSA FAASGNRTGE LNRIGGVNPT NLDDIFGSLD PAILPQYNGP ASQLHSPTGI 540 QMRQNMNLQP RPSYSASLSS SPVRASPLFG ADASSAAAVF ISRSAAFAKR SQSFIERSAG 600 NRNPGFSSPA DSGTLMPSNV SDWGSPGGKL DWGMQGEELN KLRKSASFGF RSSGSSFSNA 660 PTMMPGAADE PDVSWVQSLV KDAPPPSQLG QFGFEDQQQP QCHPNNGGPE MLPAWVEQLY 720 LEQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence

MPSRILKCAK RNNIKLRTDY LTPRLQIQPR QTISRDKTVE KSNSTRLTNL HVHSSSPFMH  60
ELVTAEEELG FLSHSVFCSF YHFSVVRKGE ISMCSGSKRK PSSTDLIMER EKQEGMRYSF  120
SILLELSASD DLDGFKRAVE EEGHDVDEAS YWYGRLIGSK KMGFEERTPL MIAAMFGDLI  180
APAYSSTFNS RKKALEVMLK GVPSIDQPFD FSEQMVYETE GQEQQEITTP RASKDGTEKK  240
EYPIDLSLPD IKNGIYSTDE FRMYTFKVKP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH  300
YSCVPCPEFR KGACRQGDAC EYAHGIFECW LHPAQYRTRI CKDETGCTRR VCFFAHKPEE  360
LRPLYASTGS AVPSPRSFSA NASSLDMGSI SPLSLNSPSM LIPPASTPPM TPSGASSPRS  420
GNMWQNQPNI APPTLQLPGS RLKSTLSARD MDLDIELLSL ESHRRRQQRL IDEISGSPSS  480
WNTGLSSPSA FAASGNRTGE LNRIGGVNPT NLDDIFGSLD PAILPQYNGP ASQLHSPTGI  540
QMRQNMNLQP RPSYSASLSS SPVRASPLFG ADASSAAAVF ISRSAAFAKR SQSFIERSAG  600
NRNPGFSSPA DSGTLMPSNV SDWGSPGGKL DWGMQGEELN KLRKSASFGF RSSGSSFSNA  660
PTMMPGAADE PDVSWVQSLV KDAPPPSQLG QFGFEDQQQP QCHPNNGGPE MLPAWVEQLY  720
LEQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-151	C3H family protein